Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I11
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20050.1 68418.m02387 protein kinase family protein contains ...    28   9.6  
At2g32330.1 68415.m03952 expressed protein   contains Pfam profi...    28   9.6  

>At5g20050.1 68418.m02387 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 452

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 139 GRPMKFPYTFSAKVAQFPYKFYLQNL 216
           GR ++  Y+F  KVA  P KF L++L
Sbjct: 73  GRELRIEYSFLRKVAGVPTKFKLEDL 98


>At2g32330.1 68415.m03952 expressed protein   contains Pfam profile:
           PF04446 family of unknown function (DUF549)
          Length = 320

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 55  KTEKVISNY*VFSIFSSFTYALTMSDA-PGRPMKFPYTFSAKVAQFPYKFYLQNLWLWR 228
           ++ K+IS   V S F+S TY +   D  P + +K+P +F  +   +P    L +   WR
Sbjct: 153 QSSKIISA--VVSFFTS-TYMMRWGDFFPHKKLKYPPSFDGRAVCYPTSDILLDYLAWR 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,128
Number of Sequences: 28952
Number of extensions: 267255
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)