Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I10
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               63   3e-10
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_35134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_4126| Best HMM Match : DUF936 (HMM E-Value=5.4)                     29   4.9  
SB_34417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 539 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDDYFXKNXXCVKRTVKRKEXDDI 715
           PF  N  PLRRIPQ YVI TST I + + KLP+H F D+ + K         K+K  +D+
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKG-----EPKKKKRSEDM 56

Query: 716 FATKKEKYVPSEQR 757
           F    E+  PSEQR
Sbjct: 57  FEEAAEEKKPSEQR 70


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 430 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYXTFCFQFVPATPYS 576
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_35134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
 Frame = +2

Query: 638 HFNDDYFXKNXX-CVKRTVKRKEXDDIFATKKEKYVP--------SEQRQN-----PIRX 775
           HF D+Y+ K     +   VK+KE  +I    +EK  P         EQ  N     P R 
Sbjct: 41  HFFDEYYKKILKNVILNCVKKKEKKNIEKKHREKKRPLAWDRTRPKEQNGNHTYGLPNRY 100

Query: 776 QSTRL*SKAIRSPEPEXKXAPPGYL 850
            STRL  KA+++P+      P   L
Sbjct: 101 GSTRLLRKAVKNPKAPTPIFPANML 125


>SB_4126| Best HMM Match : DUF936 (HMM E-Value=5.4)
          Length = 449

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
 Frame = +3

Query: 615 SATSNCQNTSMMITSXRIXXASNVQSNAK-RXMTSLPQKKRNTFHLSSAKTRSEXSRRGC 791
           S  +  QNTS  +   R    +  +SN K R  T+ P   R      SA+   +     C
Sbjct: 291 STGTRLQNTSARVKPQRNDKENKPKSNTKKRKHTNRPNNSRKDSKSGSARGTIQDITLEC 350

Query: 792 DQKPSEAPNPKXXVLPPDTSKPXFG 866
                  PN    + PP T     G
Sbjct: 351 SFDSITLPNINREIKPPGTQANNVG 375


>SB_34417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 25/82 (30%), Positives = 38/82 (46%)
 Frame = +2

Query: 572 IPQRYVIGTSTRISLGNFKLPKHFNDDYFXKNXXCVKRTVKRKEXDDIFATKKEKYVPSE 751
           +P RY    STR+ L   K PK  + D        V+ + K+K       T+ E+   + 
Sbjct: 21  LPNRY---GSTRLLLKALKNPKAPSTDI--SGEYAVQHSCKKKSPLAWDRTRSEEQNGNH 75

Query: 752 QRQNPIRXQSTRL*SKAIRSPE 817
               P R  STRL  KA+++P+
Sbjct: 76  TYGLPNRYGSTRLLRKAVKNPK 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,021,858
Number of Sequences: 59808
Number of extensions: 490194
Number of successful extensions: 3415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3403
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)