Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I10
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   104   9e-23
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U97194-2|AAN84846.1|  806|Caenorhabditis elegans Prion-like-(q/n...    28   7.5  
U97194-1|AAK68236.1|  788|Caenorhabditis elegans Prion-like-(q/n...    28   7.5  
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    28   7.5  
AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative MAP-...    28   7.5  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  104 bits (249), Expect = 9e-23
 Identities = 61/145 (42%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
 Frame = +2

Query: 425 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTXPFAFNSCPLRRIPQRYVIGTS 601
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVT P   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 602 TRISLGNFKLPKHFNDDYFXKNXXCVKRTVKRKEXDDIFATKKEKYVPSEQRQNPIRXQS 781
            ++++   K+P+H ND+YF       +++  +K   +IFA+ K +Y  SEQR+  I+   
Sbjct: 127 LKVNVSGVKIPEHINDEYFK------RKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180

Query: 782 TRL*SKAIRSPEPEXKXAPPGYLXT 856
             + +   + PE +      GYL T
Sbjct: 181 APILAAIKKHPEHKFLF---GYLGT 202



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 164 NYDLGNGVMRFSKSKMFHKKAKYK 235
           N+DL  GV+RFS S++  KK + K
Sbjct: 13  NFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 356 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 490
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>U97194-2|AAN84846.1|  806|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform b protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
 Frame = +3

Query: 600 PPEFHSATSNCQNTSMMITSXRIXXASNVQSNAKR---XMTSLPQKKRNTFHLSSAKTRS 770
           PP FH A  N Q  +MM    RI  A + Q    R     T           L+ ++   
Sbjct: 639 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRTPSRQTISVSDSHKIHELAKSRENQ 697

Query: 771 EXSRRGCDQKPSEAPN------PKXXVLPPDTSKP 857
           +  +    + PSE+ +      P+   LPP   +P
Sbjct: 698 QRQQSATPKTPSESVSTTGVVTPQRQFLPPQMMQP 732


>U97194-1|AAK68236.1|  788|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform a protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
 Frame = +3

Query: 600 PPEFHSATSNCQNTSMMITSXRIXXASNVQSNAKR---XMTSLPQKKRNTFHLSSAKTRS 770
           PP FH A  N Q  +MM    RI  A + Q    R     T           L+ ++   
Sbjct: 621 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRTPSRQTISVSDSHKIHELAKSRENQ 679

Query: 771 EXSRRGCDQKPSEAPN------PKXXVLPPDTSKP 857
           +  +    + PSE+ +      P+   LPP   +P
Sbjct: 680 QRQQSATPKTPSESVSTTGVVTPQRQFLPPQMMQP 714


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 62
           protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 711 TSLPQKKRNTFHLSSAKTRSEXSRRGCDQKPSEAPN 818
           T + Q   N F++S+A T  +  ++   Q+P + PN
Sbjct: 662 TPVNQSISNIFNISTANTMQQQQQQNVQQQPQQQPN 697


>AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative
           MAP-like protein protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
 Frame = +3

Query: 600 PPEFHSATSNCQNTSMMITSXRIXXASNVQSNAKR---XMTSLPQKKRNTFHLSSAKTRS 770
           PP FH A  N Q  +MM    RI  A + Q    R     T           L+ ++   
Sbjct: 621 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRTPSRQTISVSDSHKIHELAKSRENQ 679

Query: 771 EXSRRGCDQKPSEAPN------PKXXVLPPDTSKP 857
           +  +    + PSE+ +      P+   LPP   +P
Sbjct: 680 QRQQSATPKTPSESVSTTGVVTPQRQFLPPQMMQP 714


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,355,220
Number of Sequences: 27780
Number of extensions: 362698
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)