Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_I10
(870 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 99 2e-21
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 100 3e-21
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 98 6e-21
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 2.3
At2g27270.1 68415.m03277 expressed protein 29 4.0
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P... 29 5.3
At1g34610.1 68414.m04301 Ulp1 protease family protein contains P... 29 5.3
At5g08320.1 68418.m00979 expressed protein predicted proteins, H... 28 7.1
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 28 9.3
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 99 bits (238), Expect = 2e-21
Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 2/208 (0%)
Frame = +2
Query: 146 STKKPXNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGXKNGGT 325
+ K N DL GV ++S+S+M+HK+ + + V
Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54
Query: 326 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 505
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111
Query: 506 ILPSGLLLVTXPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXKNXXCVKR 685
L SGLLLVT PF N PLRR+ Q YVIGTST++ + L K F+D YF K V
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGK----VAE 166
Query: 686 TVKRKEXDDIFATKKE--KYVPSEQRQN 763
K+K + F +KE K +P ++ +
Sbjct: 167 KKKKKTEGEFFEAEKEEKKEIPQGKKDD 194
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 99.5 bits (237), Expect = 3e-21
Identities = 69/202 (34%), Positives = 103/202 (50%), Gaps = 2/202 (0%)
Frame = +2
Query: 164 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGXKNGGTRTVPLK 343
N DL GV ++S+S+M+HK+ + + V P++
Sbjct: 13 NPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPVE 59
Query: 344 RRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGL 523
+ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SGL
Sbjct: 60 KPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGL 117
Query: 524 LLVTXPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXKNXXCVKRTVKRKE 703
LLVT PF N PLRR+ Q YVIGTST++ + L K F+D YF K V K+K
Sbjct: 118 LLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGK----VAEKKKKKT 172
Query: 704 XDDIFATKKE--KYVPSEQRQN 763
+ F +KE K +P ++ +
Sbjct: 173 EGEFFEAEKEEKKEIPQVKKDD 194
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 98.3 bits (234), Expect = 6e-21
Identities = 69/202 (34%), Positives = 102/202 (50%), Gaps = 2/202 (0%)
Frame = +2
Query: 164 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGXKNGGTRTVPLK 343
N DL GV ++S+S+M+HK+ + V P++
Sbjct: 13 NPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------DAPVE 59
Query: 344 RRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGL 523
+ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV + L SGL
Sbjct: 60 KPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSGL 117
Query: 524 LLVTXPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXKNXXCVKRTVKRKE 703
LLVT PF N PLRR+ Q YVIGTST+I + K F+D YF K V K+K
Sbjct: 118 LLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYFGK----VAEKKKKKT 172
Query: 704 XDDIFATKKE--KYVPSEQRQN 763
+ F +KE K +P E++++
Sbjct: 173 EGEFFEAEKEEKKEIPQEKKED 194
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 335 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 424
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 362 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTXP 541
PT++K A G SKH R + + + C+ GK ++ G+ + +LL+
Sbjct: 21 PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73
Query: 542 FAFNSCPLR-RIPQ 580
FAFN ++ R+P+
Sbjct: 74 FAFNYIAIQPRVPR 87
>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1000
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 642 SMMITSXRIXXASNVQSNAKRXMTSLPQKKRNTFHLSSAKTRSEXSRRGCDQKPSEAP 815
S++ +S RI +QSN+ MTS+P + T + K+ S + Q P+++P
Sbjct: 681 SVLRSSNRIRDRP-IQSNSIENMTSIPVQPHQTASRGAGKSHVSSSAKVEKQTPNQSP 737
>At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 997
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 642 SMMITSXRIXXASNVQSNAKRXMTSLPQKKRNTFHLSSAKTRSEXSRRGCDQKPSEAP 815
S++ +S RI +QSN+ MTS+P + T + K+ S + Q P+++P
Sbjct: 678 SVLRSSNRIRDRP-IQSNSIENMTSIPVQPHQTASRGAGKSHVSSSAKVEKQTPNQSP 734
>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
sapiens and Caenorhabditis elegans
Length = 150
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 598 GADHIALRNTA*RARIESKRXSN*KQTAGQNSNKYNPLACMSTSEE 461
G D + +NT + +R S ++T ++S K NP+ C + S E
Sbjct: 85 GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 301 WR*XEWGNQNSTPQT*EV--LLPHSGENPCFIWWPS 402
W+ E Q ++PQ V L H G+ C +WWPS
Sbjct: 96 WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,624
Number of Sequences: 28952
Number of extensions: 348006
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -