Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I08
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    67   4e-12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    26   8.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.3  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +1

Query: 94  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESKVLQEG*PEA 252
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S     +K  +  K    G  EA
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEA 53


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/64 (26%), Positives = 20/64 (31%)
 Frame = +2

Query: 584 PPXGXPXPGRXPXXXFPXKXIXPTXRLXPFSXLGGXLRXPFXXXSXRPPPPPXGXGAXXX 763
           PP      G+ P          P     P S   G +  P    S  PPPPP    +   
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374

Query: 764 FGPP 775
             PP
Sbjct: 375 QPPP 378


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 82  KLIKMAKS-KNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESKVL 231
           +L+ +A S K H+ +  ++K+++NG KK RK   +S   H     + +++L
Sbjct: 169 RLLDLALSEKTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRML 218


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 725 PPPPPXGXGAXXXFGPPXPXXP 790
           PPPPP   GA    GPP P  P
Sbjct: 764 PPPPPGVAGA----GPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,712
Number of Sequences: 5004
Number of extensions: 31044
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)