Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_I08
(894 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 33 0.41
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 31 1.3
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.2
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7) 29 3.8
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 29 5.1
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 29 5.1
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 28 8.9
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 28 8.9
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 28 8.9
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 32.7 bits (71), Expect = 0.41
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = -3
Query: 892 GGXXXRXXXPSGGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
GG +GG G GG GG G G GG A GGGG+
Sbjct: 47 GGATGGGGGATGGGATGGGGGATGGGGGATGGHGGATGGGGGATGDGGGATGGGGGA 103
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = -3
Query: 859 GGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
GG G GG GG G G G A GGGG+
Sbjct: 107 GGGATGGHGGATGGGVGATGGHGGATGGHGGATGGHGGATGGGGGA 152
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +2
Query: 725 PPPPPXGXGAXXXFGPPXPXXPXXXTXXRGXTLWXXPXG--XXXGXPGXXGXP 877
PPPPP GPP P P +G P G G PG G P
Sbjct: 29 PPPPPPYEAPPPPPGPPGPDGPPGFPGPQGPNGPKGPPGLPGPPGPPGFQGPP 81
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Frame = +2
Query: 725 PPPPPXGXGAXXXFGPPXPXXPXXXTXXRGXTLWXXPXG--XXXGXPGXXGXP 877
PP PP G GPP P P G P G G PG G P
Sbjct: 272 PPGPPGDMGPPGLPGPPGPQMPPGPPGLPGAPGPKGPPGTNGPLGPPGDVGPP 324
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 859 GGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
GG G GG GG G G GG A GGGG+
Sbjct: 243 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGA 288
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 859 GGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
GG G GG GG G G GG A GGGG+
Sbjct: 250 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGA 295
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 859 GGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
GG G GG GG G G GG A GGGG+
Sbjct: 257 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGA 302
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 859 GGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
GG G GG GG G G GG A GGGG+
Sbjct: 264 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGA 309
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 859 GGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
GG G GG GG G G GG A GGGG+
Sbjct: 278 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGVGGGATGGGGGA 323
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -3
Query: 859 GGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGG 725
GG G GG GG G G GG A GGGG
Sbjct: 313 GGGATGGGGGATGGGVGATGGGGGATGGGGGVTGGGGGATGGGGG 357
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = -3
Query: 859 GGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
GG G GG GG G G GG GGGG+
Sbjct: 306 GGGATGVGGGATGGGGGATGGGVGATGGGGGATGGGGGVTGGGGGA 351
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = +2
Query: 584 PPXGXPXPGRXPXXXFPXKXIXPTXRLXPFSXLGGXLRXPFXXXSXRPPPPPXGXG 751
PP G P PG P FP + + P +PPPPP G
Sbjct: 248 PPPGMPPPGMMPPPGFPPMGMPGMGGMPPPGMPPPMPPGGMPPNMEQPPPPPPSSG 303
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +2
Query: 716 SXRPPPPPXGXGAXXXFGPPXPXXPXXXTXXRGXTLWXXPXGXXXGXPGXXGXPVXXPP 892
S PPPPP G A PP P G P P G P PP
Sbjct: 918 SVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPP 976
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Frame = +2
Query: 584 PPXGX-PXPGRXPXXXFPXKXIXPTXRLXPFSXLGGXLRXPFXXXSXRPPPPPXGXGAXX 760
PP G P P P P + P P G P + PPPP G
Sbjct: 925 PPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPP 984
Query: 761 XFGPPXPXXP 790
PP P P
Sbjct: 985 PPPPPPPPPP 994
>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 88 IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESKVLQE 237
IK N HNQ + + KK RK RH + KE K+L +
Sbjct: 123 IKQTSDNNKPQHNQKNTSKK---KKKRKDRHRKKQDQDPEPLKEKKILTQ 169
>SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)
Length = 192
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 97 AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKI 210
+K+ N TN NQ K P+KT ++T+ S +
Sbjct: 153 SKNNNQTNRNQGNTGITENTKSPKKTNIDATVPSDSSV 190
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -3
Query: 859 GGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGG 725
GG G +GG GG G G GG GGGG
Sbjct: 772 GGGDGGDGGGGGDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGG 816
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 91 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 189
K AKSK NH ++ K R KK ++T +ST
Sbjct: 145 KNAKSKIKRNHGEDNKPKRISTKKRKRTDKDST 177
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 136 KAHRNGIKKPRKTRHES 186
K HRNGIKKPR R+ S
Sbjct: 175 KWHRNGIKKPRTNRYPS 191
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 835 GXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGG 725
G GG GG G G GG R GGGG
Sbjct: 756 GGGYRGGGGYGGGGGGYRGGGGYGGGHRGGGGYGGGG 792
>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 83 NSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLXMDPKFLR 217
NS+ WQ+ I + + K EM S + R N DPK +R
Sbjct: 88 NSTSWQNINIHESLAKELARDEMQSNERRRAQANSEQKTDPKGVR 132
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 725 PPPPPXGXGAXXXFGPPXPXXP 790
PPPPP G G GPP P P
Sbjct: 665 PPPPPPGGGVP---GPPKPPPP 683
>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 650 PTXRLXPFSXL-GGXLRXPF-XXXSXRPPPPPXGXGAXXXFGPPXP 781
PT + P L GG L PF + PPPPP G PP P
Sbjct: 276 PTSQPPPPPPLTGGMLPPPFGGHPAAAPPPPPLPAGVPAPPPPPPP 321
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 85 LIKMAKSKNHTNHNQNRKAH-RNGIKKPRKTRHESTLXHGSKI 210
LI KSK+H NHN+ + H + I K H+ T+ K+
Sbjct: 571 LIVYCKSKHHANHNKGCERHFEDDINKCGCRNHDHTIAQYYKL 613
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 28.3 bits (60), Expect = 8.9
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +1
Query: 85 LIKMAKSKNHTNHNQNRKAH---RNGIKKPRKTRHESTLXHGSKIFKESKVLQEG*PEAS 255
L ++A++ N R+ H +NG KP+ T + TL K+FK SK ++ +A
Sbjct: 2313 LTEVARAGAAAKLNSRRRTHEIDKNG--KPKLTTADFTLVKKKKVFKPSKKKRDPFKDAI 2370
Query: 256 QAT-REGG*EKSYPRSKGQEMNISCK 330
+ T RE EK K + N K
Sbjct: 2371 EETLREIEEEKRLQEQKKVKDNEEVK 2396
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,933,351
Number of Sequences: 59808
Number of extensions: 272412
Number of successful extensions: 986
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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