Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I08
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    58   6e-09
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    58   8e-09
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    32   0.45 
At1g15830.1 68414.m01900 expressed protein                             32   0.45 
At5g46730.1 68418.m05757 glycine-rich protein                          29   5.5  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   5.5  
At2g30560.1 68415.m03722 glycine-rich protein                          29   5.5  
At4g01985.1 68417.m00265 expressed protein                             28   7.3  
At3g25950.1 68416.m03234 hypothetical protein                          28   9.6  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = +1

Query: 91  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESK 225
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T     K  +  +
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQR 66



 Score = 36.3 bits (80), Expect = 0.027
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 128 KTAKLTEMVSKSQGRPGTNPPLXMDPKFLRNQRFCKKGNLK 250
           ++AK  +   K   R    P   MDPKFLRNQR+ +K N+K
Sbjct: 34  QSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = +1

Query: 94  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESK 225
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T     K  +  +
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQR 44



 Score = 36.3 bits (80), Expect = 0.027
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 128 KTAKLTEMVSKSQGRPGTNPPLXMDPKFLRNQRFCKKGNLK 250
           ++AK  +   K   R    P   MDPKFLRNQR+ +K N+K
Sbjct: 12  QSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 KNHTNHNQNRKAHRNGIKKPRKTRHESTLXH 198
           KNHT H++ R ++  G K  RKT   +T  H
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFGH 118


>At1g15830.1 68414.m01900 expressed protein
          Length = 483

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = -1

Query: 876 GXPXXPGXPXXXPXGXXQRVXPRXXVXXXGXXGXGGPKXXXAPXPXGGGGG 724
           G P  PG P     G  + V P       G  G G P    AP P  GGGG
Sbjct: 131 GEPAIPGAPPPKRGGGGEPVIPGAPPPKRG--GGGEPVIPGAPPPKRGGGG 179



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = -1

Query: 876 GXPXXPGXPXXXPXGXXQRVXPRXXVXXXGXXGXGGPKXXXAPXPXGGGGG 724
           G P  PG P     G  + V P       G  G G P    AP P  GGGG
Sbjct: 147 GEPVIPGAPPPKRGGGGEPVIPGAPPPKRG--GGGEPVIPGAPPPKRGGGG 195



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = -1

Query: 876 GXPXXPGXPXXXPXGXXQRVXPRXXVXXXGXXGXGGPKXXXAPXPXGGGGG 724
           G P  PG P     G  + V P       G  G G P    AP P  GGGG
Sbjct: 163 GEPVIPGAPPPKRGGGGEPVIPGAPPPKRG--GGGEPVIPGAPPPKRGGGG 211



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = -1

Query: 876 GXPXXPGXPXXXPXGXXQRVXPRXXVXXXGXXGXGGPKXXXAPXPXGGGGG 724
           G P  PG P     G  + V P       G  G G P    AP P  GGGG
Sbjct: 179 GEPVIPGAPPPKRGGGGEPVIPGAPPPKRG--GGGEPVIPGAPPPKRGGGG 227



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = -1

Query: 876 GXPXXPGXPXXXPXGXXQRVXPRXXVXXXGXXGXGGPKXXXAPXPXGGGGG 724
           G P  PG P     G  + V P       G  G G P    AP P  GGGG
Sbjct: 195 GEPVIPGAPPPKRGGGGEPVIPGAPPPKRG--GGGEPVIPGAPLPKRGGGG 243



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = -1

Query: 876 GXPXXPGXPXXXPXGXXQRVXPRXXVXXXGXXGXGGPKXXXAPXPXGGGGG 724
           G P  PG P     G  + V P       G  G G P    AP P  GGGG
Sbjct: 100 GEPVIPGAPPPN-RGGGETVIPGAPPPIRG--GGGEPAIPGAPPPKRGGGG 147



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 22/76 (28%), Positives = 26/76 (34%)
 Frame = -1

Query: 876 GXPXXPGXPXXXPXGXXQRVXPRXXVXXXGXXGXGGPKXXXAPXPXGGGGGLXXSXKKGX 697
           G P  PG P     G  + V P   +   G  G G      AP P  GGG +      G 
Sbjct: 211 GEPVIPGAPPPKRGGGGEPVIPGAPLPKRG--GGGESVVPGAPPPKRGGGVIVNG---GC 265

Query: 696 RKXPPXXEXGXXRXVG 649
              PP    G  +  G
Sbjct: 266 ETVPPGRGGGGDKTNG 281


>At5g46730.1 68418.m05757 glycine-rich protein 
          Length = 290

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/57 (29%), Positives = 18/57 (31%)
 Frame = -3

Query: 892 GGXXXRXXXPSGGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
           GG         GG           GG+   GG  G  G GG           GGGGS
Sbjct: 161 GGGAYGGGGGHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHGGAGGYGGGGGGGS 217


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
 Frame = +2

Query: 695 RXPFXXXSXRPPPPPXGXG--AXXXFGPPXPXXP 790
           R P       PPPPP G G       GPP P  P
Sbjct: 671 RPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPP 704


>At2g30560.1 68415.m03722 glycine-rich protein 
          Length = 171

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -3

Query: 835 GXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGG 725
           G    GG    GG  G  G GG K         GGGG
Sbjct: 11  GGGKGGGGGGSGGGRGGGGGGGAKGGCGGGGKSGGGG 47


>At4g01985.1 68417.m00265 expressed protein
          Length = 579

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = -3

Query: 862 SGGXVXXXXGXXPEGGAAXXGGXXGXXGXGGXKXXXRXXAXXGGGGS 722
           SGG      G    GGA+  GG  G  G G            G GGS
Sbjct: 197 SGGGGTVGAGGRGSGGASGGGGTVGAGGRGSGGASGGVGVGGGAGGS 243


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 207 FGSMXKGGFVPGLPWLFDTISVSFAVLVMICMIL 106
           +GS    G VP   WL   + + FA+LV I  +L
Sbjct: 201 YGSGAADGVVPRWAWLSWLVVIGFAILVSILWVL 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,774,403
Number of Sequences: 28952
Number of extensions: 224920
Number of successful extensions: 868
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)