Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I05
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    29   1.1  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    28   2.0  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   3.4  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   7.9  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   7.9  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   7.9  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    26   7.9  

>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 270 HTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIE 410
           +  CKL   V +VT   P   V +LN  + + +S  +N  +TN  I+
Sbjct: 63  YDNCKLSICVPIVTTCIPYHSVENLNFNIRQNISTTLNLEKTNDSIK 109


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 623 YMPRAVSNPPPRQLPCIAAIYGFRDCSILLNISCPLLDRLTTSSFVL 483
           Y PR   N PPR+   +A I  F++     N   P    +T+  +VL
Sbjct: 17  YCPRVTPNAPPRR-ASVAVIIAFKESQDFSNPKWPQCIPITSVPYVL 62


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 484 CS-FRSCLYQPPAMKHPGLPDIMTAASIPEFVSISFTMLLTSSITW 350
           CS F SC ++    KHP  P   +   IP+F+S  F  + +  + +
Sbjct: 5   CSIFLSCSHRVIQAKHPPFPLFHSYFHIPDFLSFVFPFVASPPLAF 50


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 609 CSWHVNIALL*KTPKQDLDYQKSCWDF 689
           C WH  +     +P Q  +Y+K  W++
Sbjct: 424 CHWHSEVPESWPSPDQLREYEKESWEY 450


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 266 STYKMQVGQWSLRSHFGLSK 325
           S Y + V +WS+ S+FG SK
Sbjct: 38  SIYSIYVDKWSITSYFGNSK 57


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 457 PPAMKHPGLPDIMTAASIPEFVSISFTMLLTSSITWVLSEFTLTFGESKVTT 302
           P     P    I++ ++IP   SIS + + T+ I+   ++FT TF +  + T
Sbjct: 122 PTTSSTPTSSSILSNSTIPSSSSISASTITTTIISG-STQFTTTFVDQSIDT 172


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 466 SMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETALGM*ISHCCER 645
           S + +  T  E VS +K  H++ +   +S+KP + A +G  +   LET   +    C ER
Sbjct: 578 SCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPV----CMER 633

Query: 646 LQN 654
            ++
Sbjct: 634 FED 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,460,670
Number of Sequences: 5004
Number of extensions: 70632
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)