Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_I05
(864 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11) 80 3e-15
SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_32164| Best HMM Match : ECH (HMM E-Value=0.02) 37 0.018
SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06) 34 0.13
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77) 32 0.52
SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.69
SB_37066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1) 29 3.7
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
Length = 230
Score = 79.8 bits (188), Expect = 3e-15
Identities = 38/65 (58%), Positives = 46/65 (70%)
Frame = +2
Query: 608 LLLACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTG*NCES** 787
L L+C YRIAV D KT PEVMLGLLPG GGTQRLP L +P +LD+ LTG N +
Sbjct: 21 LALSCHYRIAVNDGKTVLSAPEVMLGLLPGAGGTQRLPRLVGLPDSLDMMLTGKNIRAQK 80
Query: 788 SKEIG 802
+K++G
Sbjct: 81 AKKMG 85
Score = 36.3 bits (80), Expect = 0.032
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 550 SRKPYIAAIQGSCLGGGLETAL 615
S KP +AAI G+C+GGGLE AL
Sbjct: 2 SPKPVVAAIMGTCMGGGLELAL 23
>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/67 (37%), Positives = 42/67 (62%)
Frame = +1
Query: 406 LKLQSLYQASLDASLQGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGS 585
+K L A + GADI+M++ + +V ++K G ++++ +E S KP +AAI G+
Sbjct: 80 VKCSVLMSAKPGCWIAGADINMLKAGENAAQVTEIAKGGQQVYQFLEDSPKPVVAAIMGT 139
Query: 586 CLGGGLE 606
C+GGGLE
Sbjct: 140 CMGGGLE 146
Score = 34.3 bits (75), Expect = 0.13
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 333 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAG 455
+ + Q + + ++ EI N ++ +V++S KPGC+IAG
Sbjct: 56 IYGIRQQPLLPLRKVMQEITHNPDVKCSVLMSAKPGCWIAG 96
>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 44.0 bits (99), Expect = 2e-04
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +2
Query: 614 LACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTG 766
LA I K FG PE+++G +PG GGTQRL +++ LTG
Sbjct: 149 LAMMCDIIYASDKAKFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTG 199
Score = 35.1 bits (77), Expect = 0.074
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +1
Query: 454 GADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETAL 615
GADI ++ T ++ +S GH + R+ + KP IAA+ G LGGG E A+
Sbjct: 101 GADIKEMQPL-TYQKCLSGDFLGH--WTRVSKCTKPVIAAVNGFALGGGCELAM 151
>SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)
Length = 280
Score = 37.1 bits (82), Expect = 0.018
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +2
Query: 623 KYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTG 766
+YR+A + KT F +PE +G P GG LP L+ L LALTG
Sbjct: 130 RYRVATE--KTTFAMPETAIGFFPDVGGAHALPRLSG-KLGLFLALTG 174
>SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)
Length = 149
Score = 34.3 bits (75), Expect = 0.13
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 526 EIFRRIEQSRKPYIAAIQGSCLGGGLETALGM*ISHC 636
E F IE+ KP IAA+ +C+GGG++ I C
Sbjct: 30 ESFTAIEKCEKPVIAAVHSACVGGGVDMICACDIRLC 66
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 448 LQGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLE 606
+ G D+S+++ T E + H+ F R+++ +AAIQG +GGG E
Sbjct: 935 VSGGDLSVLKEIHTPGEGEQMCYFMHKTFARLQRLPLISLAAIQGLAIGGGAE 987
>SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 32.3 bits (70), Expect = 0.52
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 333 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAG 455
VNS + + +EE+ + + ++E+N+ ++ S P F AG
Sbjct: 8 VNSFSLEFLEEIHDTLEDLESNTDCRGLIVTSSMPKVFSAG 48
>SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)
Length = 393
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +1
Query: 556 KPYIAAIQGSCLGGGLETALGM*ISHCCERLQNRIW 663
KP I AIQG +GGGLE AL + C E +W
Sbjct: 358 KPVIGAIQGYAVGGGLELALLCDLRVCEEDSVFELW 393
>SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 32.3 bits (70), Expect = 0.52
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 303 VVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIIS 428
V T+ VNS N Q+MEE+ I+ ++E+N +I S
Sbjct: 60 VATIKLNRKPVNSFNMQLMEEICLILEDLESNKDCRGLIITS 101
>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 31.9 bits (69), Expect = 0.69
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 608 LLLACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTG 766
L L C R+ +DS GF + L+ GG RLP L + LDL +TG
Sbjct: 138 LALLCDLRVCEEDSVFGFFNRRFGVPLVDGGA--VRLPYLIGLSRALDLIMTG 188
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 547 QSRKPYIAAIQGSCLGGGLETAL 615
++ +P I AIQG +GGGLE AL
Sbjct: 118 EANQPVIGAIQGYAVGGGLELAL 140
>SB_37066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 713 SVSLHRRAKVPT*LLVVQILFWSLSQQCDIYMPRAVSNPPPR 588
++ H R+K P ++++ I+ W+ S C P + PPPR
Sbjct: 58 TIRRHSRSK-PRIIIIIIIIIWAGSNSCSPGDPLVLERPPPR 98
>SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1)
Length = 465
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +3
Query: 555 ETVYCRNTRQLSRRWIRDCSWHVNIALL*KTPKQDLDYQKSCWDFCPAVEGHRDYL 722
+ V C + +++ WIR S + + + + CW CP V+ D L
Sbjct: 265 QRVVCWSDSEVALHWIRGSSARWKTFVANRVAEIHSSFDPECWRHCPGVDNPADLL 320
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 416 CSFNTRICFYFIYYVTNFFHHLGVK*VYFNIWRVQSDYVNSIDQLAFCMY 267
C+ C + +T FFHH+ Y N+ S+ ++ +AFC Y
Sbjct: 1998 CTLMVTCCVHDGEMLTYFFHHVLTLLTYSNVSPSASNVISVSLVMAFCYY 2047
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,556,006
Number of Sequences: 59808
Number of extensions: 534317
Number of successful extensions: 1768
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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