Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I04
         (871 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.4  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   5.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.2  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 79  QNVFQGCCYPAALLVCVNAQVSMPP 153
           + V +GC YP     C N Q + PP
Sbjct: 69  RGVTEGCDYPWRSNYCDNKQQANPP 93


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +2

Query: 359 QAYGT--RVLGPXGDSTSYGGRLDW 427
           + +GT  RV  P    T YGGRL W
Sbjct: 75  KVHGTTVRVRPPKVYPTPYGGRLVW 99


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +2

Query: 359 QAYGT--RVLGPXGDSTSYGGRLDW 427
           + +GT  RV  P    T YGGRL W
Sbjct: 389 KVHGTTVRVRPPKVYPTPYGGRLVW 413


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +2

Query: 359 QAYGT--RVLGPXGDSTSYGGRLDW 427
           + +GT  RV  P    T YGGRL W
Sbjct: 622 KVHGTTVRVRPPKVYPTPYGGRLVW 646


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +2

Query: 359 QAYGT--RVLGPXGDSTSYGGRLDW 427
           + +GT  RV  P    T YGGRL W
Sbjct: 622 KVHGTTVRVRPPKVYPTPYGGRLVW 646


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 374 RVLGPXGDSTSYGGRLDW 427
           R+  P    T YGGRL W
Sbjct: 657 RIRPPKKIPTPYGGRLVW 674


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 374 RVLGPXGDSTSYGGRLDW 427
           R+  P    T YGGRL W
Sbjct: 657 RIRPPKKIPTPYGGRLVW 674


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 374 RVLGPXGDSTSYGGRLDW 427
           R+  P    T YGGRL W
Sbjct: 657 RIRPPKKIPTPYGGRLVW 674


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 374 RVLGPXGDSTSYGGRLDW 427
           R+  P    T YGGRL W
Sbjct: 657 RIRPPKKIPTPYGGRLVW 674


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,496
Number of Sequences: 336
Number of extensions: 3351
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)