Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I04
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   4.6  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   6.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   8.0  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 85  VFQGCCYPAALLVCVNAQVSM 147
           + QGC  PA L++ VNAQV +
Sbjct: 578 LLQGCMAPATLVLKVNAQVML 598


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 468 KLVAALGSKHQLPACGILVRTLTCQPAEWSLXSSVTEGL 584
           K +  +  +HQL   G +V  L C P  WS  ++   GL
Sbjct: 61  KFIEKINKEHQLFKPGQIVVDLGCAPGIWSTIAARHVGL 99


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 367 VSLSGQFAAVIIEELPVVTTFTKKSLVALSQSPEDL-PSPHFLVPSDKVVN 218
           + L+     +++EE P +   ++ S VAL Q+P  L P+   +V  ++VV+
Sbjct: 151 IELTSDVKRIVLEEYPYLKIPSEDSNVALPQAPVLLWPAEFGMVIEEEVVD 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,595
Number of Sequences: 5004
Number of extensions: 55442
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)