Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I04
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438...    32   0.52 
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415...    31   0.91 
02_05_0314 + 27818077-27818809,27818839-27818906,27819345-278195...    30   2.1  
08_01_1027 - 10373760-10373837,10373918-10374201,10374286-10374394     28   8.5  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    28   8.5  
04_04_1173 + 31469357-31469920                                         28   8.5  

>08_02_0725 -
           20442988-20443180,20443268-20443540,20443642-20443853,
           20443935-20444247,20444334-20444441,20444537-20444643,
           20444743-20444781
          Length = 414

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 313 TTFTKKSLVALSQSPEDLPSPHFLVPSDKVV 221
           TTF +++  A S +PE+LP P  ++  D+VV
Sbjct: 233 TTFRRRTTAAASPAPEELPLPRKILDHDRVV 263


>06_01_0580 +
           4148969-4149101,4149394-4149546,4149682-4150095,
           4150218-4150294,4151479-4152699,4153057-4153128
          Length = 689

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 49  SVSSSETVTIQNVFQGCCYPAALLVCVNAQVSMPPGLR 162
           S++++ + T+Q V      P  LL C  A+VSMPP +R
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIR 431


>02_05_0314 +
           27818077-27818809,27818839-27818906,27819345-27819528,
           27819700-27819800,27820479-27820586,27820728-27820946
          Length = 470

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 489 SKHQLPACGILVRTLTC--QPAEWSLXSSVTEGLMSVYRPXLLTSGNCQHPLSXQLYKC 659
           S    P  G+ +R L+C  Q ++W   +S     +  Y P    +  C HPLS  +  C
Sbjct: 24  SLQSCPYFGVPLRWLSCTEQTSKWETSTSYQIDDVDQYSPISSVAKICTHPLSSHVNHC 82


>08_01_1027 - 10373760-10373837,10373918-10374201,10374286-10374394
          Length = 156

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 516 ILVRTLTCQPAEWSLXSSVTEGLMSVYRPXLLTSGNCQHP 635
           I+ R L  +  EW L S V   +M    P L  SGN + P
Sbjct: 82  IMERILREEAEEWELESEVRREIMEHIFPLLRRSGNARPP 121


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 100 CYPAALLVCVNAQVSMPPGLRREVSDHQPIFKVSLTP 210
           CY +  L C++A +SMP G   + S +   F+  + P
Sbjct: 290 CYKSTSLSCLSAVLSMPVGSLTQSSSNPLTFEACIAP 326


>04_04_1173 + 31469357-31469920
          Length = 187

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 124 CVNAQVSMPPGLRREVSDHQPIFKVSLTPSRYSRLCHLG-QGNGGREG 264
           C + ++ +PP  R   S    +F  S++ SR+    H G +G+ G EG
Sbjct: 43  CASRRLGLPPTTRSFASPSLVLFDTSVSRSRHRCPPHRGARGDAGSEG 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,084,734
Number of Sequences: 37544
Number of extensions: 396964
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)