Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I04
         (871 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58190.1 68414.m06605 leucine-rich repeat family protein cont...    29   3.1  
At4g32350.1 68417.m04605 expressed protein contains Pfam profile...    29   5.3  
At3g32410.1 68416.m04144 transcriptional repressor-related conta...    29   5.3  
At1g73410.1 68414.m08499 myb family transcription factor (MYB54)...    29   5.3  
At3g03090.1 68416.m00305 sugar transporter family protein simila...    28   9.3  

>At1g58190.1 68414.m06605 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1784

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 23  YREFLRFDILSRAAKLSQFKMYSKAVVIPLHSLYA*TLKF 142
           +  F  FD+++  +KL  FK+ SK+ ++ + S  +  LKF
Sbjct: 284 FEGFFSFDLIANLSKLKVFKLSSKSSLLHIESEISLQLKF 323


>At4g32350.1 68417.m04605 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 732

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 178 HQPIFKVSLTPSRYSRLCHLGQGNGGREGLRD 273
           HQPIF    T        +LGQGNG R G+ D
Sbjct: 296 HQPIFNEGDTIVMKVNYGNLGQGNGHRPGVVD 327


>At3g32410.1 68416.m04144 transcriptional repressor-related contains
           weak similarity to Swiss-Prot:Q9Y4X4 krueppel-like
           factor 12 (Transcriptional repressor AP-2rep) (HSPC122)
           [Homo sapiens]
          Length = 232

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 60  QRNCHNSKCIPRLLLSRCTPCMRERSSFYASWLTQRSIRSPANFQSQSDTLAIFTTLS-L 236
           QRN H+    PR++ S  T  +  RS       TQ S  S + F S   TL I + L+  
Sbjct: 126 QRNVHSKIFSPRMVQSPVTSPLPNRSP------TQGSPASISRFHSSPSTLGITSILNDH 179

Query: 237 GTRKWGEGRSS 269
           GT K  E  SS
Sbjct: 180 GTCKGEESTSS 190


>At1g73410.1 68414.m08499 myb family transcription factor (MYB54)
           identical to putative transcription factor (MYB54)
           GI:3941471 from [Arabidopsis thaliana]
          Length = 243

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 272 TLGESDQXLFGKGGYNRXFFNDDRGKL 352
           +L  S+Q +   GGYN  + +DDR K+
Sbjct: 124 SLMASEQIMMSSGGYNHNYSSDDRKKI 150


>At3g03090.1 68416.m00305 sugar transporter family protein similar
           to xylose permease [Bacillus megaterium]  GI:1924928;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 503

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 543 ADK*VFLPRSHTPEADASIPALPPICLFKSIAALAF 436
           A+K   L  +H+PE  + + A+PP  LF ++ AL F
Sbjct: 27  AEKEPLLKENHSPENYSVLAAIPPF-LFPALGALLF 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,432
Number of Sequences: 28952
Number of extensions: 306911
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)