Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_I03
(834 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.33
AF101319-3|AAC69355.1| 331|Caenorhabditis elegans Hypothetical ... 29 3.1
U53181-4|AAO12438.1| 440|Caenorhabditis elegans Heavy chain, un... 29 4.1
U53181-3|AAM29688.1| 516|Caenorhabditis elegans Heavy chain, un... 29 4.1
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 29 4.1
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 29 4.1
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 29 4.1
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 7.2
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 7.2
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 7.2
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 7.2
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 28 9.5
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 114 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 269
CA + A ++LNY RT L+ +NC P TT + + A N + AP
Sbjct: 38 CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88
>AF101319-3|AAC69355.1| 331|Caenorhabditis elegans Hypothetical
protein K08D9.5 protein.
Length = 331
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 404 AGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVD-KHTELVSWKFITLWENNRVYFKI 580
A +KII Y++ S NE A + +D HT + + +FIT ++N V F +
Sbjct: 57 ANTMIKIIQNEYSI----DSLLETDNETSALIETLDVSHTFIEAAEFITFLDSNDVLFPV 112
Query: 581 HNTKYNQ 601
+ Y Q
Sbjct: 113 NYPTYTQ 119
>U53181-4|AAO12438.1| 440|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform e protein.
Length = 440
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 30 EFLRFLICRLEGDLERLLTK*NFSLYLRCA 119
EF R ++C L+ L RLLTK N YL A
Sbjct: 62 EFARIIVCELKPTLARLLTK-NLPAYLLVA 90
>U53181-3|AAM29688.1| 516|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform c protein.
Length = 516
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 30 EFLRFLICRLEGDLERLLTK*NFSLYLRCA 119
EF R ++C L+ L RLLTK N YL A
Sbjct: 138 EFARIIVCELKPTLARLLTK-NLPAYLLVA 166
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 30 EFLRFLICRLEGDLERLLTK*NFSLYLRCA 119
EF R ++C L+ L RLLTK N YL A
Sbjct: 1459 EFARIIVCELKPTLARLLTK-NLPAYLLVA 1487
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 30 EFLRFLICRLEGDLERLLTK*NFSLYLRCA 119
EF R ++C L+ L RLLTK N YL A
Sbjct: 1461 EFARIIVCELKPTLARLLTK-NLPAYLLVA 1489
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 30 EFLRFLICRLEGDLERLLTK*NFSLYLRCA 119
EF R ++C L+ L RLLTK N YL A
Sbjct: 1461 EFARIIVCELKPTLARLLTK-NLPAYLLVA 1489
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = +2
Query: 377 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKHTELVS 532
FP+N+ I + NY+ +YN+ LK T+ N+ + DG + K++
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKYSGYYE 376
Query: 533 WKFITLWENNR--VYFKIHNT 589
W F + N V F+ ++T
Sbjct: 377 WPFFNVSTGNSMLVTFRSNST 397
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 172 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 282
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 172 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 282
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 172 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 282
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -3
Query: 475 GIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHGVPS 308
G GCG + +S +V +N D D+ ++E + EVL NN S LV+V +P+
Sbjct: 63 GCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLPT 118
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = +3
Query: 159 TLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAPXXXXXXXXXXXXXDGTPWSTATS 338
T + TS TTA+S +T S + + + + T ST S
Sbjct: 182 TTTSTTSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTES 241
Query: 339 CGSATDRKLLESTSH*TLDSSWPET 413
++TD ESTS T DS+ E+
Sbjct: 242 TSTSTDSTTTESTSTST-DSTTTES 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,832,813
Number of Sequences: 27780
Number of extensions: 368637
Number of successful extensions: 1327
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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