Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I02
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...   251   1e-67
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    71   2e-13
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    32   0.088
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    31   0.27 
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.27 
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    28   1.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   1.9  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   4.4  

>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score =  251 bits (614), Expect = 1e-67
 Identities = 120/217 (55%), Positives = 157/217 (72%), Gaps = 1/217 (0%)
 Frame = +1

Query: 154 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 333
           G+R +L+GPPG+GKGTQAP +++KY + HL+TGDMLR++V+  ++LG+  KK+MD+G LV
Sbjct: 3   GMRLILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLV 62

Query: 334 SDEMVVDMI-DKNLDQPECKNGFLLDGFPXTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 510
           SD++V  MI D+ L+ PECKNGF+LDGFP TV QAEKL  LL + K  L+ V+E  ++D 
Sbjct: 63  SDDIVTGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDE 122

Query: 511 LLVRRITGRLIHPPXGRXYHEXFHPPXKPMTDDVTGEALIKRSDDNVEALXKRLXTYHAQ 690
           LLVRRITGRL+HP  GR YH  F+PP  PM DDVTGE LI+RSDDN +AL KRL TYH Q
Sbjct: 123 LLVRRITGRLVHPGSGRSYHLEFNPPKVPMKDDVTGEPLIQRSDDNADALRKRLVTYHEQ 182

Query: 691 TVPLXXYYMKERSTLGASMHXKPXDDVFNKIDNIFXK 801
           T P+  +Y K+          KP + V+ +I  I  K
Sbjct: 183 TTPVVEFYKKKGKWAAVDAAQKP-EQVWEQIVAILEK 218


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
 Frame = +1

Query: 169 LLGPPGSGKGTQAPRLKEKY-CVCHLSTGDMLRAEVS-SGSDLGRRLKKVMDEGKLVSDE 342
           +LG PG+GKGTQ  RL EK+    H+S GD LR E +  GS  G  +K+ + +GK+V  E
Sbjct: 7   VLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPME 66

Query: 343 MVVDMIDKNLDQPECK--NGFLLDGFPXTVPQAEKLDDLLAKRKTAL 477
           + + +++  + +   K  + FL+DGFP  + Q E  +  +   K AL
Sbjct: 67  ITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFAL 113



 Score = 33.5 bits (73), Expect = 0.038
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 634 RSDDNVEALXKRLXTYHAQTVPLXXYYMKERSTLGASMHXKPXDDVF 774
           RSDDN+E++ KR  TY   ++P+  Y   +   +       P D VF
Sbjct: 135 RSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAEQDP-DAVF 180


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 32.3 bits (70), Expect = 0.088
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 136 PDEDPLGIRAVLLGPPGSGKGTQAPRLKEKY 228
           PDE P  +   ++GPPG+GK T    L  +Y
Sbjct: 68  PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRY 98


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 23/102 (22%), Positives = 40/102 (39%)
 Frame = +1

Query: 205 APRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQPE 384
           +P L      C  S  +MLR       D G   +K++ E +  S      ++D+++ QP 
Sbjct: 183 SPNLLRVNAPCRKSLSEMLRELKDIEDDYGSNEEKILQEFESFSSSSSESLVDRDISQP- 241

Query: 385 CKNGFLLDGFPXTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 510
            K           +P +  L     +    +D   E GI+D+
Sbjct: 242 MKKKIKRQNRLVKLPPSMNLSKSHLEGLPEIDEDAENGIDDN 283


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 124 TKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEK 225
           T + P   P     V++GP GSGK T A  + EK
Sbjct: 4   TPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEK 37


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +1

Query: 148 PLGIRAVLLGPPGSGKGTQAPRL-KEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEG 324
           P GI  ++ GPPG+GK   A  +  E      L  G  + ++++  S+    L+K  +E 
Sbjct: 258 PRGI--LMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESE--SNLRKAFEEA 313

Query: 325 KLVSDEMV-VDMIDKNLDQPECKNG 396
           +  S  ++ +D ID    + E  NG
Sbjct: 314 EKNSPAIIFIDEIDSIAPKREKTNG 338


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = +1

Query: 154 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 333
           G+R    G P       AP   EK       TGD+  +E+S+ +     +   +D G + 
Sbjct: 171 GVRKSKAGAPSDPSSVHAPSSLEKPA----GTGDLPSSEISTKAPASTTVSSSVDPGTIN 226

Query: 334 SDEMVVDMIDKN 369
            D  + D    N
Sbjct: 227 EDSSMKDHTTSN 238


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 27/103 (26%), Positives = 47/103 (45%)
 Frame = +1

Query: 202 QAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 381
           +AP+L+EKY +C + T   L   + +G    +    VMDE   + +   ++  D  L   
Sbjct: 159 KAPKLREKYDMC-IGTPMRLVQAIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSAC 217

Query: 382 ECKNGFLLDGFPXTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 510
              N      F  T+P   ++++ LAK  T     I  G++D+
Sbjct: 218 TSSN-ICKSLFSATIP--SRVEE-LAKVVTVDPIRIIVGLKDA 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,125
Number of Sequences: 5004
Number of extensions: 58607
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)