Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_I02
(839 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31) 183 1e-46
SB_19245| Best HMM Match : ADK (HMM E-Value=0) 130 1e-30
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 2e-28
SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30) 89 4e-18
SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05) 46 4e-05
SB_20945| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_42483| Best HMM Match : ADK_lid (HMM E-Value=1.5e-21) 44 2e-04
SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05) 39 0.002
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11) 34 0.17
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 33 0.22
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_732| Best HMM Match : AAA (HMM E-Value=0) 30 2.7
SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_19767| Best HMM Match : ADK (HMM E-Value=0.26) 29 3.6
SB_19998| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_6965| Best HMM Match : EB (HMM E-Value=1.3) 29 4.7
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.7
SB_6041| Best HMM Match : UBX (HMM E-Value=1) 29 4.7
SB_380| Best HMM Match : AAA (HMM E-Value=0.14) 29 4.7
SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36) 28 8.2
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 28 8.2
>SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31)
Length = 166
Score = 183 bits (446), Expect = 1e-46
Identities = 90/156 (57%), Positives = 108/156 (69%)
Frame = +1
Query: 328 LVSDEMVVDMIDKNLDQPECKNGFLLDGFPXTVPQAEKLDDLLAKRKTALDAVIEFGIED 507
LVSD++VV++ID NL +PEC+NG+LLDGFP TV QAEKLD LL KR LDAV+EF I D
Sbjct: 1 LVSDDLVVELIDDNLTKPECQNGWLLDGFPRTVAQAEKLDGLLEKRNAQLDAVVEFNIAD 60
Query: 508 SLLVRRITGRLIHPPXGRXYHEXFHPPXKPMTDDVTGEALIKRSDDNVEALXKRLXTYHA 687
SLLV+RITGRL+H GR YH F+PP + M DD+TGE L +RSDDN L KRL YH+
Sbjct: 61 SLLVKRITGRLLHKSSGRTYHTEFNPPKEHMKDDITGEPLERRSDDNEATLTKRLQAYHS 120
Query: 688 QTVPLXXYYMKERSTLGASMHXKPXDDVFNKIDNIF 795
QT PL YY K R KP D V++ + F
Sbjct: 121 QTTPLIDYYTK-RGIHHKIDASKPPDTVYSSVLKAF 155
>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
Length = 188
Score = 130 bits (315), Expect = 1e-30
Identities = 69/163 (42%), Positives = 100/163 (61%)
Frame = +1
Query: 157 IRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVS 336
+RA+++GPPGSGKGT + R+ + V HLS+G++LR V + +DLG + + +G+LV
Sbjct: 32 VRAIIMGPPGSGKGTVSERIVRDFGVEHLSSGELLRHHVQNHTDLGEEAQAYILKGELVP 91
Query: 337 DEMVVDMIDKNLDQPECKNGFLLDGFPXTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLL 516
DE++VD+I LD K +LLDGFP TV QAE L + K +D V+ + + +
Sbjct: 92 DELMVDLILHELDAK--KGNWLLDGFPRTVGQAETLSE-----KHKIDVVVNMDVPFATI 144
Query: 517 VRRITGRLIHPPXGRXYHEXFHPPXKPMTDDVTGEALIKRSDD 645
V RI R +H GR Y+ F+PP DD+TGE L +R DD
Sbjct: 145 VDRIKQRWVHAVSGRVYNLEFNPPKVEGKDDITGEPLTQREDD 187
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 105 bits (252), Expect(2) = 2e-28
Identities = 49/70 (70%), Positives = 59/70 (84%)
Frame = +1
Query: 325 KLVSDEMVVDMIDKNLDQPECKNGFLLDGFPXTVPQAEKLDDLLAKRKTALDAVIEFGIE 504
+LVSD++VV++ID NL +PEC+NG+LLDGFP TV QAEKLD LL KR LDAV+EF I
Sbjct: 54 QLVSDDLVVELIDDNLTKPECQNGWLLDGFPRTVAQAEKLDGLLEKRNAQLDAVVEFNIA 113
Query: 505 DSLLVRRITG 534
DSLLV+RITG
Sbjct: 114 DSLLVKRITG 123
Score = 38.7 bits (86), Expect(2) = 2e-28
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1
Query: 154 GIRAVLLGPPGSGKGTQ 204
G+RA+LLGPPGSGKGTQ
Sbjct: 38 GVRAILLGPPGSGKGTQ 54
>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
Length = 297
Score = 89.0 bits (211), Expect = 4e-18
Identities = 47/131 (35%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
Frame = +1
Query: 91 EFDDMAPAAAATKLKPDEDPLGIRAV-LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRA 267
E D + P+ + + + + + G R V +LG PG+GKGT + +KY CHLS GD+LR
Sbjct: 94 ERDIVTPSESDGEEEVEVEFSGQRIVYILGGPGAGKGTICDSVVKKYNYCHLSAGDLLRE 153
Query: 268 EVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQPECKNGFLLDGFPXTVPQAEKLD 447
EV+ G++ G+ + ++M EGKLV E+ + ++ + + + GFL+DGFP + Q +
Sbjct: 154 EVTRGNERGQMITEMMREGKLVPKEITIGLLQDAMREHKDMPGFLIDGFPRDIDQGITFE 213
Query: 448 DLLAKRKTALD 480
+ RK AL+
Sbjct: 214 EQHILRKKALN 224
>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 66.5 bits (155), Expect = 3e-11
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 4/161 (2%)
Frame = +1
Query: 169 LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV 348
++G PGSGK A RL E HLS G +L+ E + +D GR + + + G LVS E
Sbjct: 139 IVGGPGSGKAELAKRLAESSGRTHLSMGQLLKEEATKDTDRGREVAQAIAMGTLVSPEHA 198
Query: 349 VDMIDKNLDQPECKN--GFLLDGFPXTVPQAEKLDDLLA--KRKTALDAVIEFGIEDSLL 516
++++ + + E KN G+++DGFP + QA+ + ++ R AL+ E E L
Sbjct: 199 LNILTEKIVSDE-KNLEGYVVDGFPRSHEQAKNFTEKVSDFNRVVALECSDE---EMERL 254
Query: 517 VRRITGRLIHPPXGRXYHEXFHPPXKPMTDDVTGEALIKRS 639
+ G ++ + E + M DD+ G + K S
Sbjct: 255 AKEKLGAALNEEQLKTRIEVYRDNTIAMLDDIEGGKITKSS 295
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 634 RSDDNVEALXKRLXTYHAQTVPLXXYYMKERSTLGASMHXKPXDDVFNKIDNI 792
R DDN E + RL T+ QT+P+ +Y +E S P D+VF K+ +
Sbjct: 68 RVDDNEETILSRLETFITQTMPVIEHYQEEGKVKKISAEGGP-DEVFKKVSRV 119
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 169 LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGR 297
++G PGSGK A L E H+S G +L+ E + +D R
Sbjct: 343 IVGGPGSGKTELAKLLAESSGRTHISMGQLLKEEATKDTDRAR 385
>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Frame = +1
Query: 169 LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV 348
++G PGSGK A L E H+S G +L+ E + +D R + + + G LVS E
Sbjct: 109 VIGGPGSGKTELAKLLAESSGRTHISMGQLLKEEATKDTDRAREVARAIGMGTLVSPEHA 168
Query: 349 VDMIDKNLDQPECKN--GFLLDGFPXTVPQAEKLDD 450
+ ++ + + + E KN G+++DG+P + QA+ +
Sbjct: 169 LGILSETIVRGE-KNLGGYVVDGYPRSHEQAKNFTE 203
>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
Length = 991
Score = 46.0 bits (104), Expect = 4e-05
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Frame = +1
Query: 283 SDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQPE-CKNGFLLDGFPXTVPQAEKLDDLLA 459
++LG + ++++ G+ + +E+V ++ + + PE +G++LDGFP L D L
Sbjct: 7 TELGVKAQEILLRGEAIPEELVTKLLIEKVYSPETAHHGYILDGFPSLNEDWLSLADQLE 66
Query: 460 KRKT---ALDAVIEFGIED-SLLVRRITGRLIHPPXGRXYHEXFHPPXKP---MTDDVTG 618
K D +I I D L VRR+T +L P G+ Y + + P P + +D G
Sbjct: 67 LVKNLPMTPDFIINLKIPDKDLEVRRLTQKL-DPLTGQIYTKAEYAPENPPPLLGEDEGG 125
Query: 619 EALIKRSDDNVEALXKR 669
E + D+ + KR
Sbjct: 126 EEEEEGGDEEDKRRKKR 142
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 160 RAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSD 339
+ +LGPP SGK A +L E+Y L ++++ + KK++DE + D
Sbjct: 321 KVCVLGPPHSGKTLVAKQLAERYNAKVLDVDELIKPRRDAAK------KKMLDETR---D 371
Query: 340 EMVVDMIDK 366
E + I K
Sbjct: 372 EAISSAISK 380
>SB_20945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +1
Query: 160 RAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMD 318
R VLLGP G GK QA L KY + ++S ++++ ++ GS +G ++ +D
Sbjct: 18 RVVLLGPTGCGKSVQAELLASKYGLINVSCTELIKQSLADGSKIGESIQPYID 70
>SB_42483| Best HMM Match : ADK_lid (HMM E-Value=1.5e-21)
Length = 110
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +1
Query: 514 LVRRITGRLIHPPXGRXYHEXFHPPXKPMTDDVTGEALIKRSDD 645
+V RI R +H GR Y+ F+PP DD+TGE L +R DD
Sbjct: 8 IVDRIKQRWVHAVSGRVYNLEFNPPKVEGKDDITGEPLTQREDD 51
>SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)
Length = 712
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/93 (27%), Positives = 41/93 (44%)
Frame = +1
Query: 505 DSLLVRRITGRLIHPPXGRXYHEXFHPPXKPMTDDVTGEALIKRSDDNVEALXKRLXTYH 684
D++L+ R+ G+ + P G YH F PP P +V L+ A+ RL YH
Sbjct: 196 DTVLIERVMGKRVDPETGDVYHTTFDPPSDP---EVV-RRLVPDPKCTEAAMVGRLMEYH 251
Query: 685 AQTVPLXXYYMKERSTLGASMHXKPXDDVFNKI 783
+ Y T+ A +P DVF+++
Sbjct: 252 RHIDGILACYENIYKTVNAD---QPKADVFSQV 281
Score = 31.5 bits (68), Expect(2) = 0.002
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 97 DDMAPAAAATKLKP-DEDPLGIRAVLLGPPGSGKGTQAPRLKEKY 228
D + A K P + P R VLLGP G GK QA L KY
Sbjct: 276 DVFSQVLADIKTNPRSQAPHTPRVVLLGPTGCGKSVQAELLASKY 320
Score = 27.9 bits (59), Expect(2) = 0.002
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 331 VSDEMVVDMIDKNLDQPEC-KNGFLLDGFPXTVPQAEKL 444
V D++V+ ++ + + + + G++L GFP T QAE L
Sbjct: 325 VPDDLVLQLLHQRMSRLDAVTKGWVLHGFPKTREQAEAL 363
>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
Length = 806
Score = 33.9 bits (74), Expect = 0.17
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 24/122 (19%)
Frame = +1
Query: 151 LGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLK-------- 306
L +RA +LGPP SGK +L Y + H+ ++ + R
Sbjct: 357 LPVRACILGPPASGKTLVVKQLCTHYKLHHIRIQSVIDEAIEKLQQSAARADQDNDDEDD 416
Query: 307 -KVMDEGKLVS--------------DEMVVDMIDKNLDQPECKN-GFLLDGFPXTVPQAE 438
K ++ +L+ D+ ++ + L C+N GF+LDG+P T QA+
Sbjct: 417 MKAQEDQELLEALLESKEQNNGRYEDQYIIRFYREKLHSMPCQNQGFILDGYPKTYEQAK 476
Query: 439 KL 444
+L
Sbjct: 477 EL 478
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 33.5 bits (73), Expect = 0.22
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 634 RSDDNVEALXKRLXTYHAQTVPLXXYYMKE 723
R DDN+E+L KR T+ T+P+ +Y ++
Sbjct: 61 RPDDNIESLRKRFHTHENSTMPIIEHYRRQ 90
>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 233 FVTYPLVTCCVLKSHRDQTWDDALRRSWMRANLFPMKWWLI*LTRTWINLSARMVSYL 406
F+T +VT +L+ + + W LRR W R +W + T T I +A YL
Sbjct: 758 FITAWMVTDMMLQEDQYEWWSRGLRRWWRRGLNRVYTFWGVAFTMTVIVCTAITTDYL 815
>SB_732| Best HMM Match : AAA (HMM E-Value=0)
Length = 388
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Frame = +1
Query: 91 EFDDMAPAAAATKLKPDE--DPLGIRAV----LLGPPGSGKGTQAPRL 216
EF ++ A AT+L P + D +G++ V L GPPG+GK A ++
Sbjct: 155 EFSNIVRRAFATRLFPADVVDKMGLKHVKGILLFGPPGTGKTLMARQI 202
>SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 DMAPAAAATKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEK 225
D + A +LKP + +A L P S + TQA RLK++
Sbjct: 121 DSSSKTQAARLKPQDSSSKTQAARLKPQDSSRKTQAGRLKQE 162
Score = 28.3 bits (60), Expect = 8.2
Identities = 24/78 (30%), Positives = 31/78 (39%)
Frame = +1
Query: 97 DDMAPAAAATKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVS 276
+D + A +LK + +A L P S TQA RLK + G L+ E S
Sbjct: 106 EDSSRKTQAARLKQQDSSSKTQAARLKPQDSSSKTQAARLKPQDSSRKTQAG-RLKQEDS 164
Query: 277 SGSDLGRRLKKVMDEGKL 330
S RLK KL
Sbjct: 165 SRKTRAARLKPQDSSRKL 182
>SB_19767| Best HMM Match : ADK (HMM E-Value=0.26)
Length = 336
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = +1
Query: 484 VIEFGIEDSLLVRRITGRLIHPPXGRXYHEXFHPPXKPMTDDVTGEALIKRSDDNVEALX 663
V+ I + ++ R+T R I P G YH ++PP D L + D + +
Sbjct: 232 VVFMDIPNDTILERLTLRSIDPVTGERYHLIYNPPRSSEVKD----RLQRNKKDQEDEVN 287
Query: 664 KRLXTYHA 687
R Y A
Sbjct: 288 DRTAQYQA 295
>SB_19998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 199 TQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDE 321
T + E +C+ +TGD + +S+GS +++MDE
Sbjct: 383 TALAEVYESFCITANTTGDSMTRRMSTGSTSSLSKREIMDE 423
>SB_6965| Best HMM Match : EB (HMM E-Value=1.3)
Length = 514
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +1
Query: 103 MAPAAAATKLKPDEDPLGIRAVLLGPPGSGK-GTQAPRLKEKYCVCHLSTGDMLRAEVSS 279
MAP + + +P+ + V+L PPG+GK + + S + E S
Sbjct: 277 MAPRTTIKLSENEYEPVNLFTVILAPPGAGKTAAMKAAIDKPLSALDESCEAPILIEDFS 336
Query: 280 GSDLGRRLKKVMDEGKLVSDEM 345
S L LK G L DE+
Sbjct: 337 KSGLFNHLKDTDGMGVLCKDEI 358
>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 979
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +1
Query: 103 MAPAAAATKLKPDEDPLGIRAVLLGPPGSGK-GTQAPRLKEKYCVCHLSTGDMLRAEVSS 279
MAP + + +P+ + V++ PPG+GK + + S + E S
Sbjct: 673 MAPRTTIKLSEKEYEPVNLFTVIVAPPGAGKTAAMKAAIDKPLSALEESCEAPILIEDFS 732
Query: 280 GSDLGRRLKKVMDEGKLVSDEM 345
S L + LK G L DE+
Sbjct: 733 KSGLFKHLKGTDGMGVLCKDEI 754
>SB_6041| Best HMM Match : UBX (HMM E-Value=1)
Length = 651
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +1
Query: 103 MAPAAAATKLKPDEDPLGIRAVLLGPPGSGK-GTQAPRLKEKYCVCHLSTGDMLRAEVSS 279
MAP + + +P+ + V+L PPG+GK + + S + E S
Sbjct: 185 MAPRTTIKLSENEYEPVNLFTVILAPPGAGKTAAMKAAIDKPLSALDESCEAPILIEDFS 244
Query: 280 GSDLGRRLKKVMDEGKLVSDEM 345
S L LK G L DE+
Sbjct: 245 KSGLFNHLKDTDGMGVLCKDEI 266
>SB_380| Best HMM Match : AAA (HMM E-Value=0.14)
Length = 508
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 373 DQPECKNGFLLDGFPXTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLVRRITGRLI 543
+ P K GF+L+GFP + +A LA DA + +ED+ + R+ L+
Sbjct: 257 EDPFKKTGFILEGFPSSESEAR----FLASSGLFPDATVLLAVEDTHIADRLLPPLL 309
>SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)
Length = 444
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 307 KVMDEGKLVSDEMVVDMIDKNLDQPECKNGFLLDGFPXTVPQAEKLDDL 453
K + GK S E++V M+DK ++ CK + P+ +K +DL
Sbjct: 354 KKLSPGKDASPEVIVTMMDKKGEESSCKPCSVQTCIAPPPPKPKKPNDL 402
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 28.3 bits (60), Expect = 8.2
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Frame = +1
Query: 139 DEDPLGIRAVLLGPPGSGKGTQAPRLKEK------YCVCHLSTGDMLRAEV---SSGSDL 291
D P I +L GPPGSGK A +K+K + LS D EV +
Sbjct: 1244 DIRPDRIVIILRGPPGSGKTHVAKLIKDKEVSSGAHAPRILSLDDYFLTEVEKTEKDPET 1303
Query: 292 GRRLKKVMDE 321
G+R+KK + E
Sbjct: 1304 GKRIKKKVTE 1313
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,025,299
Number of Sequences: 59808
Number of extensions: 467485
Number of successful extensions: 1223
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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