Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I01
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.6  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   7.4  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.4  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.4  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   9.8  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   9.8  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 10  TTTHYXEFLRFGLVQVGPPNSSVSFQYE 93
           T+T+  +  R   ++ G PNS  SFQ+E
Sbjct: 201 TSTNDEQVYRLRSIRAGSPNSVCSFQFE 228


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 319 YVAQDQPRPVSWIRWHPSLLNT 384
           Y AQ Q RP S +RWH SLL+T
Sbjct: 191 YEAQ-QKRPFS-LRWHTSLLST 210


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 164 KQVKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNC 307
           K    D+ + K   +D T  + +PI   +         NE + NN NC
Sbjct: 69  KSSSHDSFKAKPKNYDSTSNSNEPISFNEPDSSNSHHNNESICNNDNC 116


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 456 YEYNLSKAMLLVPTINNVINYCFFSVQERRMP 361
           +  +L K ++     N +IN  FF+  ++RMP
Sbjct: 770 FSTSLEKTVINFENSNGIINNTFFNESKKRMP 801


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 464 HIKLAFYWNFFIATSIYDVTFCCYCIYN 547
           H    + W+    T IY +  CCY I++
Sbjct: 300 HDPSVYNWSTQYTTGIYVLLLCCYYIFD 327


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 250 DRRETQVIR--KRVCHEQLQLRTQRYVAQDQPRPVSWIR 360
           DRR  Q+    K+VC + LQ+   R  A D+     W++
Sbjct: 875 DRRHVQLFADSKKVCQKWLQVMNSRSFALDRGTEKLWLQ 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,433
Number of Sequences: 5004
Number of extensions: 44502
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)