Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I01
         (818 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22710.1 68417.m03276 cytochrome P450 family protein contains...    31   0.70 
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    29   2.8  
At4g37320.1 68417.m05285 cytochrome P450 family protein                28   6.5  
At5g37480.1 68418.m04514 expressed protein                             28   8.6  

>At4g22710.1 68417.m03276 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome p450
          Length = 526

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = -3

Query: 441 SKAMLLVPTINNVINYCFF---SVQERRMPSDPGHWPWLILRNVSLCSQL*LFMTHSFPN 271
           S  ML V  +  V+ Y +    S  ++  P  PG WP  I+ N+   +   +  T     
Sbjct: 23  SSVMLAVAALLAVVCYLWIQGKSKSKKEPPLPPGPWPLPIVGNLPFLNS-DVLHTQFQAL 81

Query: 270 DLGFSPVFPAQIGSRLALVQS 208
            L + P+    +GS+LA+V S
Sbjct: 82  TLKYGPLMKIHLGSKLAIVVS 102


>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
 Frame = -3

Query: 501 AIKKFQ*KASLICQYYEY---NLSKAMLLVPTINNVINYCFFSVQERRMPSDPGHWPWLI 331
           AIK F  K + IC        NL   +L VPTIN + N    + Q     S      +++
Sbjct: 234 AIKWFSTKGTRICDVCRQEVRNLPVILLRVPTINQLTNRRELTQQSSEPQSISVGQEFVV 293

Query: 330 LRNVSLCSQL*LFMTHSFPNDLGFSPVF-PAQIGSRLALVQSCMQAFL 190
           L  +S       F+ H    DL    +F  A     LAL+ S     L
Sbjct: 294 LVLISTVCYF-FFLEHLLIRDLNSQAIFVAAPFSFTLALLASTFAVIL 340


>At4g37320.1 68417.m05285 cytochrome P450 family protein 
          Length = 495

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 384 SVQERRMPSDPGHWPWLILRNVSLCSQL*LFMTHSFPNDLGFSPVFPAQIGSRLALVQS 208
           S ++  +P  P + P  ++ ++ L  Q      HS    LG +P+F  ++G+RL  V S
Sbjct: 25  SNRKPNLPPSPAY-PLPVIGHLHLLKQPVHRTFHSISKSLGNAPIFHLRLGNRLVYVIS 82


>At5g37480.1 68418.m04514 expressed protein
          Length = 156

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 242 AGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQCPGSD 361
           A K GE+P SFG+   + NY    K  L+ +     PG++
Sbjct: 51  AAKEGEEPISFGDNASLLNYGLGWK--LKTVVDADLPGTE 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,784,911
Number of Sequences: 28952
Number of extensions: 248449
Number of successful extensions: 989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)