Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_H24
(954 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 136 6e-33
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.55
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.3
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 28 2.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 2.2
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 2.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.9
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 27 5.1
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.0
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 136 bits (328), Expect = 6e-33
Identities = 63/87 (72%), Positives = 76/87 (87%)
Frame = +3
Query: 180 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 359
+K Q S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8 QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67
Query: 360 TPCGEGSXTCDRFQMRIHKRVIDLHSP 440
TP GEGS T + ++MRIHKR+IDLHSP
Sbjct: 68 TPNGEGSKTWETYEMRIHKRLIDLHSP 94
Score = 29.1 bits (62), Expect = 0.97
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 439 PSEIVKQITSINIXP 483
PSEIVKQITSI+I P
Sbjct: 94 PSEIVKQITSIHIEP 108
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.55
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPPXFPXY 626
PPPP PP P PP P Y
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGY 32
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +2
Query: 392 SFSDANPQESDRPTLSPLKL*NRSPQLTSSPGVKVDVTIXDAXAXPPIKISFDXPXTPPP 571
S+S + + +P P +P L S PG + V + PP++ + PPP
Sbjct: 96 SYSQPSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPP 155
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 297 KLRVKGPVRMPTKILRITTRKTPCGEGSXTCDRFQMRIHKRVIDLHS 437
K+ +KGP +P K+ T ++P S + + F+ H R+I L+S
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYS 137
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 162 VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 311
+S IEKP+A SPIH + +R L+ V GA++ + VK
Sbjct: 891 LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 153 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 251
A V + D+EKPQ +V+ R+ L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 892 PPXXXXPXPPXXPXSXSPPP 951
PP P PP P S PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPP 1718
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 173 RHRETPGRGLPYSP 214
R ETPGR LP+SP
Sbjct: 163 RANETPGRNLPFSP 176
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 642 PGXXVSXRGNXGGXGTGXGMRXGXGGGVXG 553
PG G+ GG G G R G GGG G
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRGG 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,962
Number of Sequences: 5004
Number of extensions: 51521
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -