Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_H24
(954 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 134 1e-31
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 34 0.13
AL117203-3|CAB55101.1| 448|Caenorhabditis elegans Hypothetical ... 33 0.23
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 33 0.23
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.70
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 30 2.1
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 30 2.1
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 30 2.1
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 30 2.1
AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical... 30 2.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.8
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 30 2.8
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 30 2.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.7
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 29 3.7
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.9
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 29 4.9
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 29 4.9
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 29 4.9
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 29 4.9
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 29 4.9
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 29 4.9
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 29 4.9
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 29 6.5
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 29 6.5
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.5
Z77663-1|CAB01210.1| 94|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical p... 28 8.6
Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical p... 28 8.6
U55854-5|AAA98014.1| 103|Caenorhabditis elegans Hypothetical pr... 28 8.6
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 134 bits (323), Expect = 1e-31
Identities = 60/77 (77%), Positives = 70/77 (90%)
Frame = +3
Query: 210 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSXTC 389
HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGS T
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76
Query: 390 DRFQMRIHKRVIDLHSP 440
DRFQMRIHKR+I+LH+P
Sbjct: 77 DRFQMRIHKRLINLHAP 93
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = -1
Query: 672 NQGMVXRWGXPGXXVSXRGNXGGXGTGXGMRXGXGGGVXG 553
N G WG G + G GG G G G R G GGG G
Sbjct: 74 NNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGG 113
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 696 KGGXXXKXNQGMVXRWGXPGXXVSXRGNXGGXGTGXGMRXGXGGG 562
+GG G WG G + GN GG G G G GGG
Sbjct: 57 RGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGG 101
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = -3
Query: 724 RSXGFPRQF*GGXLXQXXSRXGYXVGXARXXGQ*XGKXGGXGDXGGDEXXXGGGGXR 554
RS G+ R GG R G G G G GG G+ GG+ GGG R
Sbjct: 39 RSGGWGRPGWGGG-GPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGR 94
>AL117203-3|CAB55101.1| 448|Caenorhabditis elegans Hypothetical
protein Y48C3A.4 protein.
Length = 448
Score = 33.5 bits (73), Expect = 0.23
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +2
Query: 377 FKXLRSFSDANPQESDRPTLSPLKL*NRSPQLTSSPGV------KVDVTIXDAXAXPPIK 538
F L FS P PTL+P + + SPQ ++SPGV + + + PPI
Sbjct: 96 FPSLPLFSPTVPTSLPTPTLTPTIISSVSPQCSTSPGVFNTLNTLLQMESLSKCSTPPIN 155
Query: 539 ISFDXPXTP 565
IS TP
Sbjct: 156 ISHSPTTTP 164
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 953 GGGGXXDXGWXGGXGXXXXGGXXXKKGXXXXGPP 852
GGGG D GW G G G +G GPP
Sbjct: 116 GGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPP 149
Score = 32.3 bits (70), Expect = 0.53
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = -1
Query: 696 KGGXXXKXNQGMVXRWGXPGXXVSXRGNXGGXGTGXGMRXGXGGGVXGXSXDILMGG 526
+GG N G WG G G GG G G G R GG G + GG
Sbjct: 63 RGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGGG 119
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.9 bits (69), Expect = 0.70
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 859 PXXXXPFFXXXPPXXXXPXPPXXPXSXSPPPP 954
P P F PP P PP P PPPP
Sbjct: 48 PPICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPPXFPXY*P 632
PPPP P P PP P Y P
Sbjct: 63 PPPPPPPPPPMCPPPPPPMPSYSP 86
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 892 PPXXXXPXPPXXPXSXSPPPP 954
PP P PP P PPPP
Sbjct: 40 PPPLPCPPPPICPPQFCPPPP 60
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPPXFP 620
PPPP S+PP P PP P
Sbjct: 76 PPPPLPLSNPPAKPTPPPPP 95
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPPXFP 620
PPPP S+PP P PP P
Sbjct: 298 PPPPLPLSNPPAKPTPPPPP 317
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 461 SPQLTSSPGVKVDVTIXDAXAXPPIKISFDXPXTPPPXPXLIP 589
SP+L P V + + A PP ++ P PPP P ++P
Sbjct: 763 SPRLPPKPSVAQTIAMHSA---PPSPLTAPIPPPPPPPPPMLP 802
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 461 SPQLTSSPGVKVDVTIXDAXAXPPIKISFDXPXTPPPXPXLIP 589
SP+L P V + + A PP ++ P PPP P ++P
Sbjct: 662 SPRLPPKPSVAQTIAMHSA---PPSPLTAPIPPPPPPPPPMLP 701
>AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical
protein Y47D7A.11 protein.
Length = 129
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +3
Query: 504 PSPTXXXXRPLKYXLTXRXPPPPXXXSSPPXSPXPPXFP 620
P+P P KY + P PP P S PP P
Sbjct: 33 PTPPPSYPTPKKYPVAPTYPSPPAYAQKPSYSAPPPPAP 71
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 847 VXGGPXXXXPFFXXXPPXXXXPXPPXXPXSXSPPPP 954
+ GGP P P P PP P PPPP
Sbjct: 738 ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 598 PPXPPISPXTDXXXWPPPPXNHXLIXFGXTPP 693
PP P + P T PPPP I G PP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 847 VXGGPXXXXPFFXXXPPXXXXPXPPXXPXSXSPPPP 954
+ GGP P P P PP P PPPP
Sbjct: 738 ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 598 PPXPPISPXTDXXXWPPPPXNHXLIXFGXTPP 693
PP P + P T PPPP I G PP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -2
Query: 713 FSXPILRGGVXPKXIKXWLXGGGGQXXXSVXGEXGGXGG 597
++ P RGG K K W GGG GG GG
Sbjct: 633 YTSPGARGGAGAKANKGWYGSGGGSSMPMPVPPPGGLGG 671
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -2
Query: 713 FSXPILRGGVXPKXIKXWLXGGGGQXXXSVXGEXGGXGG 597
++ P RGG K K W GGG GG GG
Sbjct: 633 YTSPGARGGAGAKANKGWYGSGGGSSMPMPVPPPGGLGG 671
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 847 VXGGPXXXXPFFXXXPPXXXXPXPPXXPXSXSPPPP 954
+ GGP P P P PP P PPPP
Sbjct: 321 ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 598 PPXPPISPXTDXXXWPPPPXNHXLIXFGXTPP 693
PP P + P T PPPP I G PP
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 328
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 546 LTXRXPPPPXXXSSPPXSPXPP 611
+T R PPPP PP P PP
Sbjct: 283 MTPRPPPPPSSGMWPPPPPPPP 304
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 546 LTXRXPPPPXXXSSPPXSPXPP 611
+T R PPPP PP P PP
Sbjct: 293 MTPRPPPPPSSGMWPPPPPPPP 314
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 555 RXPPPPXXXSSPPXSPXPPXFP 620
R PPPP +P SP PP P
Sbjct: 291 RQPPPPVRDVTPARSPSPPPLP 312
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 953 GGGGXXDXGWXGGXGXXXXGGXXXKKGXXXXGPP 852
GGGG G GG G GG G GPP
Sbjct: 89 GGGGYGAGGGGGGGGGEAAGGGGGCTGCCNPGPP 122
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 621 RGNXGGXGTGXGMRXGXGGGVXG 553
RG GG G G+R G GGG G
Sbjct: 82 RGGNGGFGDNGGLRGGNGGGRGG 104
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 252 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 374
+E V A + G KK+ + K + PTK +T++ P E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPPXF 617
PPPP S PP P PP +
Sbjct: 150 PPPPVELSPPPRPPPPPEY 168
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPPXF 617
PPPP S PP P PP +
Sbjct: 791 PPPPVELSPPPRPPPPPEY 809
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPPXF 617
PPPP S PP P PP +
Sbjct: 791 PPPPVELSPPPRPPPPPEY 809
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 619 GKXGGXGDXGGDEXXXGGGGXR 554
G GG G GGD GGGG R
Sbjct: 310 GPMGGRGGFGGDRGGYGGGGGR 331
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPPXF 617
PPPP S PP P PP +
Sbjct: 791 PPPPVELSPPPRPPPPPEY 809
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPP 611
PPPP SPP P PP
Sbjct: 298 PPPPIKEESPPPPPPPP 314
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 561 PPPPXXXSSPPXSPXPP 611
PPPP SPP P PP
Sbjct: 298 PPPPIKEESPPPPPPPP 314
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 694 GGXLXQXXSRXGYXVGXARXXGQ*XGKXGGXGDXGGDEXXXGGGG 560
GG GY G G GG G GG GGGG
Sbjct: 324 GGDFPAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGGGGGG 368
>Z77663-1|CAB01210.1| 94|Caenorhabditis elegans Hypothetical
protein F53F4.1 protein.
Length = 94
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 618 GNXGGXGTGXGMRXGXGGGVXG 553
G GG GTG GM G G G+ G
Sbjct: 39 GGYGGYGTGLGMYNGLGYGLGG 60
>Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical
protein F32D8.7b protein.
Length = 380
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +3
Query: 504 PSPTXXXXRPLKYXLTXRXPPPPXXXSSPPXSPXPPXF 617
P+PT RP T R PPP PP P P F
Sbjct: 225 PAPTLAPFRPRP---TTRRLPPPTTPPPPPPPPAPSPF 259
>Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical
protein F32D8.7a protein.
Length = 378
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +3
Query: 504 PSPTXXXXRPLKYXLTXRXPPPPXXXSSPPXSPXPPXF 617
P+PT RP T R PPP PP P P F
Sbjct: 223 PAPTLAPFRPRP---TTRRLPPPTTPPPPPPPPAPSPF 257
>U55854-5|AAA98014.1| 103|Caenorhabditis elegans Hypothetical
protein C04G6.6 protein.
Length = 103
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 407 NPQESDRPTLSPLKL*NRSPQLTSS-PGVKVDVTIXDAXAXPPIKISFDXPXTPPPXP 577
NP++ + L K N +++ S ++ I DA PP+K + +PPP P
Sbjct: 37 NPKKKPKKNLKNKKSRNSESEMSDSGKTTDCEMEISDADDYPPVKRYPNRRRSPPPPP 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,000,372
Number of Sequences: 27780
Number of extensions: 354830
Number of successful extensions: 2056
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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