Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H22
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   2e-04
At3g52110.1 68416.m05719 expressed protein                             29   4.0  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   9.2  
At3g50190.1 68416.m05488 expressed protein contains Pfam profile...    28   9.2  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   9.2  
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th...    28   9.2  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +1

Query: 379 FGSLIIGYARNPSLKQQLFSYAILGFALSE 468
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At3g52110.1 68416.m05719 expressed protein 
          Length = 362

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -3

Query: 199 VAPVQSCRRWQTWLQGRSVWRQTAFCFYKVRRATTKNTEKEETGLWNVQ---FLSQILRI 29
           V  ++S +  +    GR ++   +   Y+++R  T+ TE+E+TG   V+    + +I+  
Sbjct: 136 VPRLKSTQSARNLFSGRDIFGHISDFCYELKRLATRVTEREDTGKSEVKESHQVGEIVNQ 195

Query: 28  PYS 20
           PYS
Sbjct: 196 PYS 198


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 113 LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 223
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At3g50190.1 68416.m05488 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 463

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 178 RRWQTWLQGRSVWRQTAF--CFYKVRRATTKNTEKEETGLWNVQFLSQILRIP 26
           RRW +W    +  RQ     C  ++R A  K   ++   LW++QF +  L IP
Sbjct: 292 RRW-SWKPVVADKRQQKLLHCVTELREAGIKFKRRKSDRLWDIQFKNGCLEIP 343


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 317  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 189
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
           threonine--tRNA ligase, putative similar to SP|O04630
           Threonyl-tRNA synthetase, mitochondrial precursor (EC
           6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
           thaliana}; contains Pfam profiles PF00587: tRNA
           synthetase class II core domain (G, H, P, S and T),
           PF03129: Anticodon binding domain, PF02824: TGS domain
          Length = 458

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 272 SRPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAM 403
           SRPH  ++ +TLLP+ +    R+WE    ++ ++ S   + SA+
Sbjct: 37  SRPHDPIK-ITLLPDGIEKEGRRWETSPMDIAVQISKGLAKSAL 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,543,711
Number of Sequences: 28952
Number of extensions: 369387
Number of successful extensions: 1096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)