Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H21
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    85   9e-18
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    29   0.65 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   2.0  
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.6  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   3.5  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   6.1  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   8.0  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 85.4 bits (202), Expect = 9e-18
 Identities = 39/108 (36%), Positives = 65/108 (60%)
 Frame = +2

Query: 338 IKRDPESYKEEFHQQLAHFETTLEIFNLNPTQYSKKLDEQAMFLAQVAQCYFNEMKTFPQ 517
           +K+DP+SY+EEF QQ  H+ET  EIF +NP+    +      F++Q    Y +    FP 
Sbjct: 21  VKKDPKSYREEFLQQWNHYETAREIFLVNPSSDISEFCSLIDFISQTCNYYHDVTADFPS 80

Query: 518 KIVDVLKTHNTTLHNEMRLALCKCLILLRNKNFITPFDLLELFFTLLK 661
           +++++L+ ++T    E+   +  CL+LL+NK  I+P  LL+ FF L +
Sbjct: 81  ELIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPITLLQCFFPLFR 128


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 521 IVDVLKTHN-TTLHNEMRLALCKCLILLRNKNFITPFDLLELFFTLLKCQDKYLRDFLKT 697
           + D+ K  N T ++ E+    C+ +    N+ F T +  LEL   LLK   KYL + L  
Sbjct: 648 VTDITKIENGTKIYEEILQDCCRHIDKSGNE-FTTAY--LELLEVLLKVGQKYLAESLLE 704

Query: 698 HII 706
           HI+
Sbjct: 705 HIL 707


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +2

Query: 542  HNTTLHNEMRLALCKCLILLRNKNFITPFDLLELFFTL-LKCQD--KYLRDFLKTHIITD 712
            + TT+ +E  +   +   L+ +   + PF L E      LK  D  +Y +DF K HII +
Sbjct: 2924 NTTTVFDERHIEKLRLSRLMSDDGVVYPFQLREALGQYWLKHLDNGRYFKDFYKAHIIIE 2983


>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 512 PQKIVDVLKTHNTTLHNEMRLALCKCLILLRNKNFITPFDLLELFFTLLKCQDKYLRDFL 691
           P K+    +  NT +HN  R  + K   + R+++F   FD   LFF +L+ + + +R   
Sbjct: 37  PSKLCISSEKLNTPMHNRSRSGIKKHTSVKRSRSF-KLFD--TLFFGILRLRKQRIRSVK 93

Query: 692 KTHIIT 709
           K   I+
Sbjct: 94  KVRSIS 99


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 367 FFVRFWITFYKILQLR*VVRKLIIMPNHFXNIFVQ 263
           FF  F + FY    L  VVR+L     HF NI VQ
Sbjct: 180 FFCTFQLLFYAFRPL--VVRRLPFTLMHFWNIIVQ 212


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 584 KCLIL-LRNKNFITPFDLLELFFTLLKCQDKYLRDFLKT 697
           +CL+  + +K+F      +ELF  +L C+   L+D L+T
Sbjct: 118 QCLLQSISHKDFYVRLYSVELFSAILSCRPTELKDCLQT 156


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 697 SYYNRHQKHEHEK*RYETEFTLQNFILACYK 789
           SYY+ H K + E  RYE    +   +  C K
Sbjct: 81  SYYDEHAKPKVENIRYEVNEVIDKKVAPCIK 111


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 566 FHYVMLCYVFLKHLQFFVEKFSFH*NNT 483
           F  + +CY  L+H++ FVE  + + ++T
Sbjct: 856 FRLICVCYSRLEHIKLFVESSTIYASST 883


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,776
Number of Sequences: 5004
Number of extensions: 63920
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)