Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H21
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.     102   3e-22
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...   102   3e-22
U80838-5|AAT48617.1|  317|Caenorhabditis elegans Hypothetical pr...    30   1.9  

>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score =  102 bits (245), Expect = 3e-22
 Identities = 50/125 (40%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
 Frame = +2

Query: 338 IKRDPESYKEEFHQQLAHFETTLEIFNLNPTQYSKKLD---EQAMFLAQVAQCYFNEMKT 508
           I++DPESYKEEF +Q  +F  T+++ +L P Q  +++    +  +FL+ +A+ Y  E K 
Sbjct: 54  IRKDPESYKEEFLEQFNYFVQTMKLLHLQPEQSRQEMQSLVDSVLFLSGLAKHYPKESKQ 113

Query: 509 FPQKIVDVLKTHNTTLHNEMRLALCKCLILLRNKNFITPFDLLELFFTLLKCQDKYLRDF 688
           F   + ++L+     L  E+R+A CK L+LLRN++ I P  L+E FF L+K +DK LR F
Sbjct: 114 FSDSLFELLREQGAGLDPEVRMAFCKALVLLRNQDMIDPIILMETFFELVKVEDKVLRKF 173

Query: 689 LKTHI 703
           L + I
Sbjct: 174 LLSSI 178


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score =  102 bits (245), Expect = 3e-22
 Identities = 50/125 (40%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
 Frame = +2

Query: 338 IKRDPESYKEEFHQQLAHFETTLEIFNLNPTQYSKKLD---EQAMFLAQVAQCYFNEMKT 508
           I++DPESYKEEF +Q  +F  T+++ +L P Q  +++    +  +FL+ +A+ Y  E K 
Sbjct: 54  IRKDPESYKEEFLEQFNYFVQTMKLLHLQPEQSRQEMQSLVDSVLFLSGLAKHYPKESKQ 113

Query: 509 FPQKIVDVLKTHNTTLHNEMRLALCKCLILLRNKNFITPFDLLELFFTLLKCQDKYLRDF 688
           F   + ++L+     L  E+R+A CK L+LLRN++ I P  L+E FF L+K +DK LR F
Sbjct: 114 FSDSLFELLREQGAGLDPEVRMAFCKALVLLRNQDMIDPIILMETFFELVKVEDKVLRKF 173

Query: 689 LKTHI 703
           L + I
Sbjct: 174 LLSSI 178


>U80838-5|AAT48617.1|  317|Caenorhabditis elegans Hypothetical
           protein F47F6.9 protein.
          Length = 317

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 216 LKQQKSKYLVPVCSYYCTKIFXKW 287
           L  QKSK+LV  CS YC +   +W
Sbjct: 98  LSMQKSKFLVTACSTYCEEGSEEW 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,882,748
Number of Sequences: 27780
Number of extensions: 358372
Number of successful extensions: 772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)