Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H21
         (869 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052...    67   2e-11
At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profi...    57   2e-08

>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
           SDA1 domain; similar to mystery 45A
           (GI:16797816){Drosophila melanogaster}
          Length = 804

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 13/139 (9%)
 Frame = +2

Query: 338 IKRDPESYKEEFHQQLAHFETTLEIFNL-------------NPTQYSKKLDEQAMFLAQV 478
           IKRDPE Y+ E       F+T++++F+              +    SK L ++AMFLA V
Sbjct: 31  IKRDPEGYETELQLIYKQFKTSVDLFHELAALSFSSTGGIGSDPSVSKDLGDRAMFLAHV 90

Query: 479 AQCYFNEMKTFPQKIVDVLKTHNTTLHNEMRLALCKCLILLRNKNFITPFDLLELFFTLL 658
              Y  ++  FP ++  +L+T    + + +R  + + LILL N+  +   DLL LF  + 
Sbjct: 91  TPFYPKQLAAFPAQLTGLLRTSCLAMPSGLRNHIAQALILLMNRKSLVIEDLLALFLDIQ 150

Query: 659 KCQDKYLRDFLKTHIITDI 715
              DK LR+    HI+  I
Sbjct: 151 TLGDKNLRNLAFGHIVQTI 169


>At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profile
           PF05285: SDA1
          Length = 698

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 30/85 (35%), Positives = 46/85 (54%)
 Frame = +2

Query: 461 MFLAQVAQCYFNEMKTFPQKIVDVLKTHNTTLHNEMRLALCKCLILLRNKNFITPFDLLE 640
           MFLA V   Y N++  FP ++ D+L+T    + + +R  + + LILL N+  +   DLL 
Sbjct: 1   MFLAHVTPFYPNQLAAFPAQLTDLLRTSCLAMPSGLRYQVAQSLILLMNRKSLVIEDLLA 60

Query: 641 LFFTLLKCQDKYLRDFLKTHIITDI 715
           LF  +    DK LR    +HI+  I
Sbjct: 61  LFLDIQTLGDKNLRKLAFSHIVQTI 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,295
Number of Sequences: 28952
Number of extensions: 295612
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)