Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H18
         (989 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    31   1.1  
09_06_0081 + 20745627-20748144,20748211-20748308                       30   3.3  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   7.6  
07_03_0190 + 14893243-14893582,14893684-14893808                       29   7.6  
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    29   7.6  

>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 595 GPXXLXLCPXAPXPPGPXXXXXTPXLXXXPXPPP 696
           G   L L P  P PPGP      P     P PPP
Sbjct: 244 GAPGLPLPPPPPPPPGPPPREIVPGQTLLPPPPP 277


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +1

Query: 565 SRXAPXXRXXGPXXLXLCPXAPXPPGPXXXXXTPXLXXXPXPP 693
           S  AP      P    L P AP PP P     TP     P PP
Sbjct: 254 SLRAPAPHLRAPSCT-LAPPAPTPPAPTFHVPTPPTPATPAPP 295


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 16/54 (29%), Positives = 18/54 (33%)
 Frame = +1

Query: 577 PXXRXXGPXXLXLCPXAPXPPGPXXXXXTPXLXXXPXPPPXXXIFXESXXPFXP 738
           P  R  GP  +   P  P PP P      P     P PPP      +   P  P
Sbjct: 699 PANRTNGPG-VPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPP 751


>07_03_0190 + 14893243-14893582,14893684-14893808
          Length = 154

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 13/44 (29%), Positives = 14/44 (31%)
 Frame = -2

Query: 691 GVWXTXXGXGSXXXXGGQXGXGXXGKGXSXXXPXXEXXGPXGWP 560
           G W      G     GG  G G  G G        +  GP  WP
Sbjct: 18  GGWPAAGADGGGGGAGGGCGGGGAGGGYGGEGDGDDDGGPRRWP 61


>05_01_0004 -
           34967-35149,35340-35501,36078-36225,36309-36385,
           36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 19/68 (27%), Positives = 22/68 (32%)
 Frame = +1

Query: 619 PXAPXPPGPXXXXXTPXLXXXPXPPPXXXIFXESXXPFXPSLXAXFXXRPXPXPGSRFXL 798
           P +P P  P     TP L   P PPP       S  P  P   A     P     +    
Sbjct: 56  PTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPT 115

Query: 799 SPFREAXP 822
           +P   A P
Sbjct: 116 APVPAAAP 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,449,132
Number of Sequences: 37544
Number of extensions: 219209
Number of successful extensions: 717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)