Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H18
         (989 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)                    31   1.4  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.4  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)
          Length = 203

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 365 LXDSANARGEGVGVWGALPXP 427
           + +SANARGE V V GALP P
Sbjct: 101 INESANARGEAVCVLGALPLP 121


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 365 LXDSANARGEGVGVWGALPXP 427
           + +SANARGE V V GALP P
Sbjct: 465 INESANARGEAVCVLGALPLP 485


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 26/87 (29%), Positives = 29/87 (33%)
 Frame = -2

Query: 634 GXGXXGKGXSXXXPXXEXXGPXGWPXGXXXGXMXEPRXGXGKPELPAGGVXGYRXPAXXX 455
           G G  G G S   P     GP   P G   G     R G G    P G   G + P    
Sbjct: 763 GNGRKGPGTSPDGPGNARKGPGTSPDGPGTG-----RKGPGTS--PGGPGTGRKGPGTSP 815

Query: 454 PGAXXSVKRGXRKSAPNPNPLSPGVGR 374
            G       G  +  P  +P  PG GR
Sbjct: 816 DGP------GSGRKGPGTSPDGPGTGR 836



 Score = 28.7 bits (61), Expect = 7.7
 Identities = 26/87 (29%), Positives = 29/87 (33%)
 Frame = -2

Query: 634 GXGXXGKGXSXXXPXXEXXGPXGWPXGXXXGXMXEPRXGXGKPELPAGGVXGYRXPAXXX 455
           G G  G G S   P     GP   P G   G     R G G    P G   G + P    
Sbjct: 721 GNGRKGPGTSPDGPGTGRKGPRTSPDGPGTG-----RKGPGTS--PDGPGNGRKGPGTSP 773

Query: 454 PGAXXSVKRGXRKSAPNPNPLSPGVGR 374
            G       G  +  P  +P  PG GR
Sbjct: 774 DGP------GNARKGPGTSPDGPGTGR 794


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,663,133
Number of Sequences: 59808
Number of extensions: 184901
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2943548647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)