Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H18
         (989 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38560.1 68418.m04662 protein kinase family protein contains ...    31   1.6  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    30   2.7  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    29   3.6  
At1g54215.1 68414.m06180 proline-rich family protein contains pr...    29   3.6  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   6.3  

>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = +1

Query: 628 PXPPGPXXXXXTPXLXXXPXPPPXXXIFXESXXPFXPSLXAXFXXRPXPXP 780
           P PP P     TP     P PPP       S  P  PS  A     P P P
Sbjct: 153 PSPPKPSPSTPTPTTTTSPPPPPATSASPPSSNPTDPSTLA---PPPTPLP 200


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 24/80 (30%), Positives = 25/80 (31%)
 Frame = +1

Query: 595 GPXXLXLCPXAPXPPGPXXXXXTPXLXXXPXPPPXXXIFXESXXPFXPSLXAXFXXRPXP 774
           G     L P  P PP P     T      P PPP       S   F PS        P P
Sbjct: 475 GDHVTLLPPPPPPPPPPLFTSTTSFSPSQPPPPPPPPPLFMSTTSFSPSQPPP-PPPPPP 533

Query: 775 XPGSRFXLSPFREAXPFLLP 834
              S    SP +   P  LP
Sbjct: 534 LFTSTTSFSPSQPPPPPPLP 553


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/54 (31%), Positives = 18/54 (33%)
 Frame = +1

Query: 619 PXAPXPPGPXXXXXTPXLXXXPXPPPXXXIFXESXXPFXPSLXAXFXXRPXPXP 780
           P  P PP P      P     P PPP       S  P  PS    +   P P P
Sbjct: 379 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPS-PPPYVYPPPPPP 431


>At1g54215.1 68414.m06180 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 169

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 613 LCPXAPXPPGPXXXXXTPXLXXXPXPPPXXXIFXESXXPFXP 738
           L P +P PP P      P     P PPP   +  E+  P  P
Sbjct: 37  LFPQSPPPPPPPPPPPPPPPPPPPPPPPAVNMSVETGIPPPP 78


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
 Frame = +3

Query: 537 IXPXXXPSGQPXGPXXSXXGXXXLXPLPXXPXPXW-PPXXXXDPXPXXVXXTPXXTXNFP 713
           + P   PS  P  P  S        P P  P P + PP     P P      P      P
Sbjct: 402 LPPPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPP 461

Query: 714 XVXAPFXP 737
            V +P  P
Sbjct: 462 PVYSPPPP 469



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = +1

Query: 619 PXAPXPPGPXXXXXTPXLXXXPXPP-PXXXIFXESXXPFXPSLXAXFXXRPXPXP 780
           P  P PP P     TP     P PP P   ++  S  P  P     +   P P P
Sbjct: 405 PSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVY--SPPPPPPPPPPVYSPPPPPPP 457



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/54 (29%), Positives = 18/54 (33%)
 Frame = +1

Query: 619 PXAPXPPGPXXXXXTPXLXXXPXPPPXXXIFXESXXPFXPSLXAXFXXRPXPXP 780
           P  P PP P      P     P PPP       S  P  P + +     P P P
Sbjct: 453 PPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPP 506



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
 Frame = +1

Query: 619 PXAPXPPGPXXXXXTPXLXXXPXP------PPXXXIFXESXXPFXPSLXAXFXXRPXPXP 780
           P  P PP P     +P     P P      PP   ++     P  P+    +  RP P P
Sbjct: 482 PPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPP 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,196,785
Number of Sequences: 28952
Number of extensions: 139056
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2411911104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)