Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_H17
(870 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 32 0.70
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 30 2.1
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 29 3.7
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22) 29 3.7
SB_44152| Best HMM Match : CRAM_rpt (HMM E-Value=0.021) 29 6.5
SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8) 29 6.5
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 28 8.6
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 8.6
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 367 SRLRGAAWRRRQGQLVPQ*QPRPERQGVRDQELSQRHPQRAQLQH--AGRRSGLHVQTE 537
S L AAW R ++PQ + P++ + E S+ +Q AG SG H T+
Sbjct: 1639 SSLEKAAWLSRSLAVIPQIESSPDQSSAVESEFSELSESEPSVQPLVAGASSGSHYSTQ 1697
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 30.3 bits (65), Expect = 2.1
Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 1/175 (0%)
Frame = +2
Query: 167 QAGSFTVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGHGL 346
++G V G ++ + D NV I + DFN + + A +++ G
Sbjct: 589 KSGDIDVEGPELKGPKVEGDIDTPDVNVKGDIDTPDFNVKGDIEGPDA-----DIDSPGW 643
Query: 347 SLTGTRIPGF-GEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGVDY 523
G ++P F G G GK + + D+ F N I + P+ N L G +D
Sbjct: 644 KFKGPKMPKFKGPSFGGKGK-----SGDIDIEGPDFDGPNVKGDI-DTPDIN-LKGDIDT 696
Query: 524 MFKQKVGASLSAAHSDVINRNDYSXGGKLNLFRSPSSSLDFNAGFKKFDTPFYRS 688
V + +D+ G K+ F+ PS +G FD P ++S
Sbjct: 697 P-DVNVKGDIDGPDADLHGPGWKFKGPKMPKFKGPSFGGKGKSGDIDFDGPDFKS 750
Score = 29.9 bits (64), Expect = 2.8
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 1/171 (0%)
Frame = +2
Query: 167 QAGSFTVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGHGL 346
++G V G ++ + D NV I + DFN + + A ++NG
Sbjct: 181 KSGDIDVEGPELKGPKVEGDIDTPDVNVKGDIDTPDFNVKGDIDGPDA-----DINGPSW 235
Query: 347 SLTGTRIPGF-GEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGVDY 523
G ++P F G G GK + + D+ F N I + P+ N L G +D
Sbjct: 236 KFKGPKMPKFKGPSFGGKGK-----SGDIDIEGPDFDGPNVKGDI-DTPDIN-LKGDIDT 288
Query: 524 MFKQKVGASLSAAHSDVINRNDYSXGGKLNLFRSPSSSLDFNAGFKKFDTP 676
V + +DV G K+ F+ PS +G +D P
Sbjct: 289 P-DVNVKGDIDGPDADVHGPGWKFKGPKMPKFKGPSFGGKGKSGDIDYDGP 338
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 489 GALGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 340
G + M + + LIA A+++ N L +PA S PKP V V+ SP
Sbjct: 395 GDMDMQISQILIAAGYAVKTSEFNPNPLRIPAAKSTPPKPA-PVQVQASP 443
>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
Length = 822
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 143 HVPTRARRQAGSFTVNS---DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHK 292
HVP + G + NS T G+ + +PL ++K V+ +G ND HK
Sbjct: 526 HVP-KVGSHGGVYFWNSFRNKDTDGSLIVLPLKDHEKRVIGLLGVDTLNDSHK 577
>SB_44152| Best HMM Match : CRAM_rpt (HMM E-Value=0.021)
Length = 697
Score = 28.7 bits (61), Expect = 6.5
Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 7/161 (4%)
Frame = +2
Query: 167 QAGSFTVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGHGL 346
++G V G G +K + D N+ I + DFN + + A +++ G
Sbjct: 276 KSGDIEVEGPGFKGPKIKGDIDTPDINLKGDIDTPDFNVKGDIDGPDA-----DIDSPGW 330
Query: 347 SLTGTRIPGF-GEQLGVAGKVNLFHNNNHDL-SAKAFAIRNSPSAIPNAPNFNTLGGGVD 520
G ++P G G GK + D K A P A P+ + GG
Sbjct: 331 KFKGPKMPKLKGPSFGGKGKSGDSDYDGPDFDKPKVKANVEVPDASIKGPDIDGSAGGRI 390
Query: 521 YMFKQKV---GASLSAAH--SDVINRNDYSXGGKLNLFRSP 628
+ + G + A H S + +D+S G + F+ P
Sbjct: 391 NLPDANIKGPGLKIKADHEESSSDSDDDHSHGFSMPKFKMP 431
>SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8)
Length = 206
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 399 PATPSCSP--KPGMRVPVRLSPCPFTLSRASPA-EAALSLWRSLKSADPM 259
P TPSCSP + + +PVRL LS +P EA + L S+K+ P+
Sbjct: 10 PLTPSCSPLERDVLALPVRLG----GLSMTNPCLEADIELSSSVKATAPL 55
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/72 (26%), Positives = 27/72 (37%)
Frame = -1
Query: 342 PCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACL 163
P P L R PA L L+ P S LP+ +P+ ++ P
Sbjct: 619 PTPLPLERPVPAVTRLPTHLPLEQPVPAVTSLPTHLPLERPLPDVTRLPTHLPLERPVPA 678
Query: 162 RARVGTCLPLAK 127
R+ T LPL +
Sbjct: 679 VTRLPTDLPLER 690
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = -1
Query: 414 NKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSL 235
+ + + ATPS SP P VP L + ++P+ AA S+ + L T
Sbjct: 218 SSVVVAATPSTSPVPATFVP-SLPTVASASTLSAPSVAASSIATPVNKTVVATLKTL--A 274
Query: 234 PVRGTFRAAPEVPSEFTVKLPACLRAR 154
PV R PS +++ P + R
Sbjct: 275 PVVVVSRGVSISPSSSSIRTPVSIAVR 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,295,823
Number of Sequences: 59808
Number of extensions: 434045
Number of successful extensions: 1199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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