Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H16
         (920 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)        117   2e-26
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)                       28   9.2  
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  28   9.2  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score =  117 bits (281), Expect = 2e-26
 Identities = 65/120 (54%), Positives = 76/120 (63%)
 Frame = +3

Query: 102 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 281
           KVK  ELR K                + LRVAKVTGG ASKLSKI+VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 282 QKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 461
           Q  + NLR  Y+ KKY PLDLR K TRAMR++LTK EA  KT K+ +K + F  R YAVK
Sbjct: 71  QTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKKLAHFSLRKYAVK 130


>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +3

Query: 216 ASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTK 386
           ASK SK RV R  IA++    H  ++  +RN   N K     +R  K+RAM+K  T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642


>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 426

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 249 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 362
           KA ++V +  H   K NL +H+K K+Y P+  R  + R
Sbjct: 70  KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRNLRER 107


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 315 KNKKYKPLDLRAKKTR-AMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 455
           +N+K    DL  K T  +M  +  KH AK+  R E++  S  PP V A
Sbjct: 104 ENEKLWLSDLVEKSTPCSMDNSRQKHIAKLLLRSEMKGNSELPPHVQA 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,797,244
Number of Sequences: 59808
Number of extensions: 256327
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)