Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H16
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   9.0  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 278 IHNVNTCDSFSYNTDLGQFRSNSTSNF 198
           IHN N  ++ +YN +   + +N+ +N+
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNY 349


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 12  LPXSLXWEFLKIW 50
           LP S  WE  K+W
Sbjct: 119 LPFSATWEVFKVW 131


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 318 NKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 425
           NK+  P   +    +  RK  T  +  I +RKE +K
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 430 DFFLISFLVLIFASCLVRALRIARVFLALKSK 335
           DF + S L   +  C++       +F AL+++
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNIFKALRNR 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,083
Number of Sequences: 438
Number of extensions: 2922
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)