Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H16
         (920 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo...   122   3e-28
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari...   122   3e-28
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari...   122   3e-28
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)           122   4e-28
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi...   121   6e-28
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof...    29   4.3  
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi...    29   4.3  

>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
           ribosomal protein L35- cytosolic, Arabidopsis thaliana,
           PIR:T00549
          Length = 123

 Score =  122 bits (294), Expect = 3e-28
 Identities = 64/122 (52%), Positives = 78/122 (63%)
 Frame = +3

Query: 96  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 275
           M ++K  ELR K                  LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 276 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 455
             QK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K+  FP R YA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 456 VK 461
           +K
Sbjct: 121 IK 122


>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score =  122 bits (294), Expect = 3e-28
 Identities = 64/122 (52%), Positives = 78/122 (63%)
 Frame = +3

Query: 96  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 275
           M ++K  ELR K                 +LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 276 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 455
             QK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K   FP R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 456 VK 461
           +K
Sbjct: 121 IK 122


>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score =  122 bits (294), Expect = 3e-28
 Identities = 64/122 (52%), Positives = 78/122 (63%)
 Frame = +3

Query: 96  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 275
           M ++K  ELR K                 +LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 276 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 455
             QK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K   FP R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 456 VK 461
           +K
Sbjct: 121 IK 122


>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
          Length = 123

 Score =  122 bits (293), Expect = 4e-28
 Identities = 64/122 (52%), Positives = 78/122 (63%)
 Frame = +3

Query: 96  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 275
           M ++K  ELR K                  LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 276 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 455
             QK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K+  FP R YA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 456 VK 461
           +K
Sbjct: 121 IK 122


>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
           to 60S ribosomal protein L35 GB:AAC27830
          Length = 123

 Score =  121 bits (292), Expect = 6e-28
 Identities = 64/122 (52%), Positives = 78/122 (63%)
 Frame = +3

Query: 96  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 275
           M ++K  ELR K                  LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 276 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 455
             QK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K+  FP R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 456 VK 461
           +K
Sbjct: 121 IK 122


>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 366

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 273 VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 416
           V H    VN  +H   + YKPL++RA+  + +R A  ++    +TRK+
Sbjct: 290 VTHVDWSVN--DHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335


>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
           similarity to MADS-box protein GB:AAC26702 GI:3128222
           from [Arabidopsis thaliana]; contains Pfam profile
           PF00319: SRF-type transcription factor (DNA-binding and
           dimerisation domain)
          Length = 184

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +3

Query: 219 SKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 398
           S  SK+R + K + ++        K   RN  K+   + +DL+ +   A +  L  ++A 
Sbjct: 73  SASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLKLEDLVAFKAKLEAYQAG 132

Query: 399 IKTRKEIRKKSLFPPRV 449
           +K RK +  + L  P +
Sbjct: 133 LK-RKHVEMEDLSSPSI 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,684,395
Number of Sequences: 28952
Number of extensions: 194352
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)