Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H15
         (981 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   2.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.2 bits (50), Expect(2) = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 419 PXGGXXPPPPPXG 457
           P G   PPPPP G
Sbjct: 5   PPGNPPPPPPPPG 17



 Score = 22.2 bits (45), Expect(2) = 1.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 437 PPPPPXGXXXXXKKK 481
           PPPPP G     K K
Sbjct: 25  PPPPPPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect(2) = 3.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 425 GGXXPPPPPXG 457
           GG  PPPPP G
Sbjct: 759 GGPPPPPPPPG 769



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 625 PGXXXXXXXPPPPXPP 578
           PG       PPPP PP
Sbjct: 768 PGVAGAGPPPPPPPPP 783



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 598 PPPPXPPKKXXFXGGXK 548
           PPPP PP      GG +
Sbjct: 775 PPPPPPPPPAVSAGGSR 791



 Score = 21.0 bits (42), Expect(2) = 3.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 419 PXGGXXPPPPP 451
           P  G  PPPPP
Sbjct: 756 PIMGGPPPPPP 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,630
Number of Sequences: 5004
Number of extensions: 22737
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)