Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H15
         (981 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526...    25   1.8  
02_02_0052 - 6389387-6389491,6389492-6389586,6390077-6390221           29   7.5  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   9.9  

>08_01_0600 -
           5262573-5262773,5262850-5262952,5263050-5263180,
           5263263-5263312,5265266-5265725,5266349-5266708
          Length = 434

 Score = 24.6 bits (51), Expect(2) = 1.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 597 PPPPXPQKKXXXGGG 553
           PPPP PQ     GGG
Sbjct: 3   PPPPPPQAGVAGGGG 17



 Score = 24.6 bits (51), Expect(2) = 1.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 447 GGGGXXPPXGXFXXKKXXXKXFFPPPPP 364
           GGGG  P  G         +  + PPPP
Sbjct: 14  GGGGAPPQWGAIPPPVPHQQQQYAPPPP 41


>02_02_0052 - 6389387-6389491,6389492-6389586,6390077-6390221
          Length = 114

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 595 PPPXPPKKXXFXGGXKKKXFFFF 527
           PPP PP      GG + + FFF+
Sbjct: 35  PPPPPPPTVLVDGGLRAEFFFFY 57


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 20/73 (27%), Positives = 21/73 (28%)
 Frame = -3

Query: 652 PPXXXXXXXPGXXXXXXXPPPPXPPKKXXFXGGXKKKXFFFFXGXGGXGXXXXXXXFFFF 473
           PP       PG        PPP PP      GG       +  G GG             
Sbjct: 338 PPPSSYGGGPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGYGGRPMPGGGGPGAPP 397

Query: 472 XXXXXPXGGGGGG 434
                  GGGGGG
Sbjct: 398 PYHGGGGGGGGGG 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,908,463
Number of Sequences: 37544
Number of extensions: 535808
Number of successful extensions: 9321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5452
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)