Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H14
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z47358-9|CAA87434.3|  436|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U23176-2|AAC46717.2|  667|Caenorhabditis elegans Patched family ...    28   9.8  

>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 231 LHTLHERYRVVLDQLVMCPRNWIYRRQENGTSEHRRTRTDRGAREI 94
           L  L+++Y+ V ++L    ++W   ++E G  E    R +   RE+
Sbjct: 56  LGKLNDKYKAVQEELKTMKQSWTQLKREKGVLETENRRLETAKREL 101


>Z47358-9|CAA87434.3|  436|Caenorhabditis elegans Hypothetical
           protein ZK1307.7 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 97  LSCSSVCPCASVFTRTIFLSAIYPVPWAHHKLVQYNAIPFMKRVKN---YF-YSSADNKI 264
           +S S+   CA+ F R I +S I      HH+L+   A  F+  +     YF +    N  
Sbjct: 132 ISTSAFLICAAAFERYITISKIACQFARHHRLIIIGACIFIAIIAKGPMYFEFEVVPNAN 191

Query: 265 ITGIQALDSLNSK 303
            TG+ +L ++ S+
Sbjct: 192 CTGVTSLTAIPSE 204


>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 136 TRTIFLSAIYPVPWAHHKLVQYNAIPFMKR 225
           T+    S+  P PW+ H  ++Y  IPF+ +
Sbjct: 868 TQAQMASSDDPAPWSLHSFIRYYYIPFISK 897


>U23176-2|AAC46717.2|  667|Caenorhabditis elegans Patched family
           protein 2 protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 136 TRTIFLSAIYPVPWAHHKLVQYNAIPFMKR 225
           T+    S+  P PW+ H  ++Y  IPF+ +
Sbjct: 301 TQAQMASSDDPAPWSLHSFIRYYYIPFISK 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,804,232
Number of Sequences: 27780
Number of extensions: 354197
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)