Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H14
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -1

Query: 327 ARSNVHG-RLTVERVQRLDTCNNFII 253
           ARS + G R+T E+++R D  +N+I+
Sbjct: 707 ARSLMEGPRMTAEQLKRTDIIHNYIM 732


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +1

Query: 160 IYPVPWAHHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVGY 339
           +Y  P   H L   N  PFMK    Y     +N    GIQ + +  S A V    G + +
Sbjct: 266 LYYSPLTSHSLYYVNMEPFMK--SQY---EENNIEYEGIQDIFNTQSSAKVMSKNGVLFF 320

Query: 340 PYVN 351
             VN
Sbjct: 321 GLVN 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,556
Number of Sequences: 438
Number of extensions: 5013
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)