Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H13
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.4  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   4.4  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   7.7  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 199 ILQHRRPRLPLMQLEAPCSFNFCSLRA 119
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 492 PXTQHPPPPXXTPXXXPXPXDXPLLRVNGI 581
           P    PPPP  +    P P D P L   G+
Sbjct: 415 PTESPPPPPISSSSTTPRPDDKPSLPPRGL 444


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 201 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 308
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,386
Number of Sequences: 5004
Number of extensions: 43190
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)