Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H11
         (904 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   6.8  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   6.8  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   28   9.0  

>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 594 PPPXGGXIGXPPKTXG-XPPXKTFXP 668
           PPP GG  G PP   G  PP + F P
Sbjct: 459 PPPPGGMRGMPPPPMGMYPPPRGFPP 484


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 594 PPPXGGXIGXPPKTXGXPPXKTFXPXGPXKXP 689
           PPP  G    PP     PP  +F   GP   P
Sbjct: 271 PPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPP 302


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 594 PPPXGGXIGXPPKTXGXPPXKTFXPXGPXKXP 689
           PPP  G    PP     PP  +F   GP   P
Sbjct: 183 PPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPP 214


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 594 PPPXGGXIGXPPKTXGXPPXKTFXPXGP 677
           PPP GG    PP   G PP     P  P
Sbjct: 368 PPPVGGPPPPPPPIEGRPPSSLGNPPPP 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,155
Number of Sequences: 59808
Number of extensions: 202011
Number of successful extensions: 414
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)