Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H11
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81088-5|CAB03133.1|  215|Caenorhabditis elegans Hypothetical pr...    31   1.5  
X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2 prot...    31   1.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.5  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81088-5|CAB03133.1|  215|Caenorhabditis elegans Hypothetical
           protein F53F1.5 protein.
          Length = 215

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = +2

Query: 434 FXXXXGGGGXVXXQKKTPPPPXGRGVXXWXXXXXXXXXXXXXXRXXXGGGXGXPPP 601
           F    GGGG        PPPP G G                      GGG G P P
Sbjct: 17  FLLPSGGGGGCGCAPPPPPPPCGCGAPALPPLQLPRFELPRLSLPSLGGGCGGPAP 72


>X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2
           protein.
          Length = 231

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = +2

Query: 434 FXXXXGGGGXVXXQKKTPPPPXGRGVXXWXXXXXXXXXXXXXXRXXXGGGXGXPPP 601
           F    GGGG        PPPP G G                      GGG G P P
Sbjct: 17  FLLPSGGGGGCGCAPPPPPPPCGCGAPALPPLQLPRFELPRLSLPSLGGGCGGPAP 72


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = -1

Query: 718 PPPRGLFXGXGXFXGPXGXKVFXGGXPXVLGGXPIXPPXGG 596
           PPP GL    G   GP       GG P + GG P  PP GG
Sbjct: 714 PPPPGLPPITG---GPPPPPP-PGGLPPITGGPPPPPPPGG 750


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = -1

Query: 718 PPPRGLFXGXGXFXGPXGXKVFXGGXPXVLGGXPIXPPXGG 596
           PPP GL    G   GP       GG P + GG P  PP GG
Sbjct: 714 PPPPGLPPITG---GPPPPPP-PGGLPPITGGPPPPPPPGG 750


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = -1

Query: 718 PPPRGLFXGXGXFXGPXGXKVFXGGXPXVLGGXPIXPPXGG 596
           PPP GL    G   GP       GG P + GG P  PP GG
Sbjct: 297 PPPPGLPPITG---GPPPPPP-PGGLPPITGGPPPPPPPGG 333


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = +3

Query: 594  PPPXGGXI--GXPPKTXGXPPXKTFXPXGP 677
            PPP GG    G PP   G PP     P GP
Sbjct: 1574 PPPRGGSHCQGPPPLMGGPPPRLGMPPPGP 1603


>Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical
           protein R06A4.9 protein.
          Length = 809

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 728 WEKPPPPGXFXGXGXLXGALG 666
           W++PPP G + G G   G+ G
Sbjct: 631 WQRPPPQGSYGGQGPPQGSYG 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,211,194
Number of Sequences: 27780
Number of extensions: 214570
Number of successful extensions: 667
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)