Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H10
         (1102 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.12 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   0.27 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.29 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   5.5  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 761 PPPXXGXGGXXVXXPPPPPP 820
           PPP  G  G     PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.66
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 759 PPPPXXGXGGXXSFXPPPPP 818
           PPPP  G  G     PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 748 GXGXPPPXXGGGGGXGXFXPPPPP 819
           G   PPP   G  G G   PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect(2) = 0.12
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 911 PXPPPPPKXPXXXFLPPPXPP 973
           P PPPPP        PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 911 PXPPPPPKXPXXXFLPPPXPP 973
           P PPPPP        PPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 750 PGXPPPPXXGXGGXXSFXPPPPP 818
           P  PPPP    G      PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 806 GXKXPXPPPPPXXGGGXPXP 747
           G   P PPPP   G G P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 911 PXPPPPPKXPXXXFLPPPXPPXXGG 985
           P P PPP        PPP PP   G
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAG 772



 Score = 21.8 bits (44), Expect(2) = 0.12
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 761 PPPXXGXGGXXVXXPPPPP 817
           PPP    GG     PPPPP
Sbjct: 752 PPPAPIMGGPPP--PPPPP 768


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect(2) = 0.27
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 767 PXXGXGGXXVXXPPPPPP 820
           P  G G      PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPP 342



 Score = 24.6 bits (51), Expect(2) = 0.46
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 755 GXPPPXXGXGGXXVXXPPPPP 817
           G PP   G     +  PPPPP
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPP 343



 Score = 24.6 bits (51), Expect(2) = 0.27
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 911 PXPPPPPKXPXXXFLPPP 964
           P PPPP   P     PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378



 Score = 24.2 bits (50), Expect(2) = 0.46
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 9/30 (30%)
 Frame = +2

Query: 911 PXPPPPPK---------XPXXXFLPPPXPP 973
           P PPPPP+          P     PPP PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 750 PGXPPPPXXGXGGXXSFXPPPPP 818
           PG PPPP    G      PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 911 PXPPPPPKXPXXXFLPPPXPP 973
           P PPPPP        PPP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 911 PXPPPPPKXPXXXFLPPPXPP 973
           P PPPPP        PPP PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 761 PPPXXGXGGXXVXXPPPPPP 820
           PPP    G      PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 759 PPPPXXGXGGXXSFXPPPPP 818
           PPPP  G        PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 748 GXGXPPPXXGGGGGXGXF 801
           G G PPP  GG GG G F
Sbjct: 196 GSGGPPPGPGGFGGFGGF 213


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 911 PXPPPPPKXP 940
           P PPPPP  P
Sbjct: 238 PPPPPPPTLP 247



 Score = 22.2 bits (45), Expect(2) = 5.5
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 761 PPPXXGXGGXXVXXPPPPPP 820
           PP         +  PPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPP 243


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 963 GGGRKXXXGXFGGGGGXGXK 904
           GGG +   G FGG GG G +
Sbjct: 446 GGGSRGGRGGFGGRGGFGGR 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,287
Number of Sequences: 5004
Number of extensions: 36947
Number of successful extensions: 255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 581717144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)