Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H09
         (879 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    40   0.012
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                40   0.012
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    40   0.012
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    40   0.012
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    40   0.012
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    40   0.012
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                38   0.048

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 39.9 bits (89), Expect = 0.012
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D+V VT +  +  +KA  V VEP+W  LFA  L    +  LI N G+
Sbjct: 19  DEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 39.9 bits (89), Expect = 0.012
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D+V VT +  +  +KA  V VEP+W  LFA  L    +  LI N G+
Sbjct: 19  DEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 39.9 bits (89), Expect = 0.012
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D+V VT +  +  +KA  V VEP+W  LFA  L    +  LI N G+
Sbjct: 19  DEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 39.9 bits (89), Expect = 0.012
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D+V VT +  +  +KA  V VEP+W  LFA  L    +  LI N G+
Sbjct: 19  DEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 39.9 bits (89), Expect = 0.012
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D+V VT +  +  +KA  V VEP+W  LFA  L    +  LI N G+
Sbjct: 19  DEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 39.9 bits (89), Expect = 0.012
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D+V VT +  +  +KA  V VEP+W  LFA  L    +  LI N G+
Sbjct: 19  DEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 37.9 bits (84), Expect = 0.048
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D+V VT +  +  +KA  V VEP+W  LFA  L    +  LI + G+
Sbjct: 19  DEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICDVGA 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,606,403
Number of Sequences: 237096
Number of extensions: 331669
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)