Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H09
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    47   2e-05
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    43   3e-04

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/47 (48%), Positives = 29/47 (61%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D+VA+T E  +  LKA  V  EPYW  LFA  L G  V++LIT+  S
Sbjct: 19  DEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSS 65


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 22/47 (46%), Positives = 28/47 (59%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D+VA+T E  +  LKA  V  EP W  LFA  L G  V++LIT+  S
Sbjct: 19  DEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSS 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,818,079
Number of Sequences: 27780
Number of extensions: 45285
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)