Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H09
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       38   0.009
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    38   0.009
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    38   0.009
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    38   0.009
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    38   0.009
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     37   0.020

>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           + +A+T +  +  +KA  V +E YW +LFA       V DLI N G+
Sbjct: 19  EGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65


>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           + +A+T +  +  +KA  V +E YW +LFA       V DLI N G+
Sbjct: 19  EGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           + +A+T +  +  +KA  V +E YW +LFA       V DLI N G+
Sbjct: 19  EGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           + +A+T +  +  +KA  V +E YW +LFA       V DLI N G+
Sbjct: 19  EGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           + +A+T +  +  +KA  V +E YW +LFA       V DLI N G+
Sbjct: 19  EGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +2

Query: 182 DDVAVTXEXXSXXLKAGXVYVEPYWXILFAXXLXGXXVRDLITNXGS 322
           D + +T E  S  +K   V VE YW  LFA       + DLI N G+
Sbjct: 18  DGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMNVGA 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,541,351
Number of Sequences: 28952
Number of extensions: 41564
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)