Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H06
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AC006680-5|AAK72301.2|  300|Caenorhabditis elegans Serpentine re...    29   5.8  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +3

Query: 774 PPRXGGTXXPPPXX-GGNRVXPXNXGGYPXXTPLF--PP 881
           PP  GG   PPP   GG    P   GG P   P+F  PP
Sbjct: 77  PPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPP 115


>AC006680-5|AAK72301.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein60 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 146 IFKSIKVFTSAFL*NWYEWFF*SFYVLSLERFCCQILRIPYSEW 15
           I KS       FL   YE    + +++S+ RFC   + + Y +W
Sbjct: 71  IMKSYSFIVGCFLLFCYELSVLTHFLISINRFCAVWVPLKYEKW 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,159,785
Number of Sequences: 27780
Number of extensions: 161343
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)