Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H06
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    31   0.77 
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   5.4  

>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = +3

Query: 738 PXPXXXTXXAXXPPRXGGTXXPPPXXGGN-RVXPXNXGGYPXXTPLF--PP 881
           P P      A  PP  GG+  PPP  G N    P N  G P   P +  PP
Sbjct: 252 PPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPP 302


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +3

Query: 774 PPRXGGTXXPPPXXGGNRVXPXNXGGYPXXTPLFPP 881
           PP  GG   PPP   G    P   GG P   P  PP
Sbjct: 672 PPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPP--PP 705


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,490,470
Number of Sequences: 28952
Number of extensions: 141483
Number of successful extensions: 232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)