Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H05
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   37   0.024
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   28   8.3  

>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPP-XGVXXGXPPPXXXPKKXSPP 842
           PP   G     G +   GG+  PP  G  PP  G   G PPP   P    PP
Sbjct: 31  PPAPGGYPPAPGGYPPSGGYGYPPAGGYPPPQPGYAGGPPPPGIAPGIGGPP 82


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 756 PPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP     PP G   G PPP   P    PP
Sbjct: 195 PPPPPPPPPPGFPGGAPPPPPPPFGAPPP 223



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 775 PXXXGFXXGTPPPPPXXKKXPXP 843
           P   GF  G PPPPP     P P
Sbjct: 201 PPPPGFPGGAPPPPPPPFGAPPP 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,195,930
Number of Sequences: 59808
Number of extensions: 222860
Number of successful extensions: 840
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)