Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H05
         (848 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X17568-1|CAB57868.1|  240|Homo sapiens snRNP B' protein protein.       32   3.0  
X17567-1|CAB57867.1|  231|Homo sapiens snRNP B protein protein.        32   3.0  
X15893-1|CAA33902.1|  231|Homo sapiens protein ( Human B cod gen...    32   3.0  
M34082-1|AAA36579.1|  233|Homo sapiens protein ( Human small nuc...    32   3.0  
M34081-1|AAA36578.1|  224|Homo sapiens protein ( Human small nuc...    32   3.0  
CR456969-1|CAG33250.1|  240|Homo sapiens SNRPB protein.                32   3.0  
BC080516-1|AAH80516.1|  231|Homo sapiens small nuclear ribonucle...    32   3.0  
BC003530-1|AAH03530.1|  234|Homo sapiens SNRPB protein protein.        32   3.0  
AY742712-1|AAU89981.1|  231|Homo sapiens small nuclear ribonucle...    32   3.0  
AL049650-8|CAB46715.1|  240|Homo sapiens small nuclear ribonucle...    32   3.0  
AL049650-7|CAB46714.1|  231|Homo sapiens small nuclear ribonucle...    32   3.0  
AL646016-1|CAI17009.1| 1865|Homo sapiens formin 2 protein.             30   9.2  
AL590490-1|CAH70931.1| 1865|Homo sapiens formin 2 protein.             30   9.2  
AL513342-1|CAI17121.1| 1865|Homo sapiens formin 2 protein.             30   9.2  
AL359918-1|CAI15795.1| 1865|Homo sapiens formin 2 protein.             30   9.2  
AB209153-1|BAD92390.1| 1332|Homo sapiens formin 2 variant protein.     30   9.2  

>X17568-1|CAB57868.1|  240|Homo sapiens snRNP B' protein protein.
          Length = 240

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 218


>X17567-1|CAB57867.1|  231|Homo sapiens snRNP B protein protein.
          Length = 231

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 218


>X15893-1|CAA33902.1|  231|Homo sapiens protein ( Human B cod gene
           for B/B' snRNP associated protein. ).
          Length = 231

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 218


>M34082-1|AAA36579.1|  233|Homo sapiens protein ( Human small
           nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
          Length = 233

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 162 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 211


>M34081-1|AAA36578.1|  224|Homo sapiens protein ( Human small
           nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
          Length = 224

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 162 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 211


>CR456969-1|CAG33250.1|  240|Homo sapiens SNRPB protein.
          Length = 240

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 218


>BC080516-1|AAH80516.1|  231|Homo sapiens small nuclear
           ribonucleoprotein polypeptides B and B1 protein.
          Length = 231

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 218


>BC003530-1|AAH03530.1|  234|Homo sapiens SNRPB protein protein.
          Length = 234

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 218


>AY742712-1|AAU89981.1|  231|Homo sapiens small nuclear
           ribonucleoprotein polypeptide B protein.
          Length = 231

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 218


>AL049650-8|CAB46715.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptides B and B1 protein.
          Length = 240

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 218


>AL049650-7|CAB46714.1|  231|Homo sapiens small nuclear
           ribonucleoprotein polypeptides B and B1 protein.
          Length = 231

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
           PP   G   P G      G   PP  G+ PP G   G PP    P    PP
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPP-GMRPPMGPPMGIPPGRGTPMGMPPP 218


>AL646016-1|CAI17009.1| 1865|Homo sapiens formin 2 protein.
          Length = 1865

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
 Frame = +3

Query: 690  PPXLXGXXTPFGXFXXGGGF*RPPXX---GVTPPXGVXX-GXPPPXXXPKKXSPP 842
            PP L G   P      G G   PP     G+ PP  +   G PPP   P    PP
Sbjct: 1099 PPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1153


>AL590490-1|CAH70931.1| 1865|Homo sapiens formin 2 protein.
          Length = 1865

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
 Frame = +3

Query: 690  PPXLXGXXTPFGXFXXGGGF*RPPXX---GVTPPXGVXX-GXPPPXXXPKKXSPP 842
            PP L G   P      G G   PP     G+ PP  +   G PPP   P    PP
Sbjct: 1099 PPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1153


>AL513342-1|CAI17121.1| 1865|Homo sapiens formin 2 protein.
          Length = 1865

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
 Frame = +3

Query: 690  PPXLXGXXTPFGXFXXGGGF*RPPXX---GVTPPXGVXX-GXPPPXXXPKKXSPP 842
            PP L G   P      G G   PP     G+ PP  +   G PPP   P    PP
Sbjct: 1099 PPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1153


>AL359918-1|CAI15795.1| 1865|Homo sapiens formin 2 protein.
          Length = 1865

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
 Frame = +3

Query: 690  PPXLXGXXTPFGXFXXGGGF*RPPXX---GVTPPXGVXX-GXPPPXXXPKKXSPP 842
            PP L G   P      G G   PP     G+ PP  +   G PPP   P    PP
Sbjct: 1099 PPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1153


>AB209153-1|BAD92390.1| 1332|Homo sapiens formin 2 variant protein.
          Length = 1332

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
 Frame = +3

Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXX---GVTPPXGVXX-GXPPPXXXPKKXSPP 842
           PP L G   P      G G   PP     G+ PP  +   G PPP   P    PP
Sbjct: 566 PPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 620


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,351,649
Number of Sequences: 237096
Number of extensions: 1485722
Number of successful extensions: 5605
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5326
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)