Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_H05
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.4
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.2
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 5.5
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 5.5
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 28 9.6
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 9.6
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 808 GGXPX*TPXGGVTPXXGGL*KPPPXXKXPKGVXXP 704
GG P P GG+ P GG PPP P G P
Sbjct: 740 GGPPPPPPPGGLPPISGG---PPPPPPPPGGCPPP 771
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 808 GGXPX*TPXGGVTPXXGGL*KPPPXXKXP 722
GG P P GG+ P GG PPP P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLP 752
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = +3
Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
PP G P G GG PP G PP + G PPP P PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPP--ITGGPPPP--PPPGGLPP 753
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 808 GGXPX*TPXGGVTPXXGGL*KPPPXXKXPKGVXXP 704
GG P P GG+ P GG PPP P G P
Sbjct: 740 GGPPPPPPPGGLPPISGG---PPPPPPPPGGCPPP 771
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 808 GGXPX*TPXGGVTPXXGGL*KPPPXXKXP 722
GG P P GG+ P GG PPP P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLP 752
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = +3
Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
PP G P G GG PP G PP + G PPP P PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPP--ITGGPPPP--PPPGGLPP 753
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 808 GGXPX*TPXGGVTPXXGGL*KPPPXXKXPKGVXXP 704
GG P P GG+ P GG PPP P G P
Sbjct: 323 GGPPPPPPPGGLPPISGG---PPPPPPPPGGCPPP 354
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 808 GGXPX*TPXGGVTPXXGGL*KPPPXXKXP 722
GG P P GG+ P GG PPP P
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLP 335
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = +3
Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
PP G P G GG PP G PP + G PPP P PP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPP--ITGGPPPP--PPPGGLPP 336
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +3
Query: 684 FSPPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
+ PP G P GG P G PP G PPP P +PP
Sbjct: 409 YGPPPPGGPGAPGSYGPPQGG---PGGFGPPPPGGPGAYGPPPTGFPPVGAPP 458
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 808 GGXPX*TPXGGVTPXXGGL*KPPPXXKXPKGVXXPXNXGG 689
GG P GG P GG+ PPP P G P GG
Sbjct: 181 GGPPGHGGQGG-PPGHGGMGGPPPGQGGPGGPGGPGGPGG 219
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 808 GGXPX*TPXGGVTPXXGGL*KPPPXXKXPKGVXXPXNXGG 689
GG P GG P GG+ PPP P G P GG
Sbjct: 461 GGPPGHGGQGG-PPGHGGMGGPPPGQGGPGGPGGPGGPGG 499
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +3
Query: 690 PPXLXGXXTPFGXFXXGGGF*RPPXXGVTPPXGVXXGXPPPXXXPKKXSPP 842
PP G P+G GGG+ RP G PP P P P+ P
Sbjct: 71 PPFDGGYNRPYGG-GGGGGYGRP--QGYVPPPPPPPTQPEPEPEPRPEPQP 118
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 755 APPXXGNPXXXGLXGXPPPXXPPXKXXP 838
APP G P G G PP PP P
Sbjct: 175 APPSGGPPGPFGPSGAPPSGGPPGPFNP 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,867
Number of Sequences: 27780
Number of extensions: 197799
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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