Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H04
         (859 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_A4BJ47 Cluster: Putative uncharacterized protein; n=1; ...    34   4.0  
UniRef50_UPI0001555F21 Cluster: PREDICTED: similar to zinc finge...    33   7.0  
UniRef50_A4M099 Cluster: Putative uncharacterized protein precur...    33   9.2  
UniRef50_P17437 Cluster: Skin secretory protein xP2 precursor; n...    33   9.2  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +2

Query: 515 DPDMIRYIDEFGQTTTRMQ 571
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A4BJ47 Cluster: Putative uncharacterized protein; n=1;
           Reinekea sp. MED297|Rep: Putative uncharacterized
           protein - Reinekea sp. MED297
          Length = 146

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 15/39 (38%), Positives = 27/39 (69%)
 Frame = +1

Query: 112 VLGQLYTHRITMLVD*CFYGHLTMNLVFWVFLSLVHSEV 228
           +LGQ++ H  ++L+  C   H TMNL FW+ L+L+ +++
Sbjct: 109 ILGQVWQHTRSILI--CTGLHATMNLCFWLNLALLGNQI 145


>UniRef50_UPI0001555F21 Cluster: PREDICTED: similar to zinc finger
            protein 709; n=1; Ornithorhynchus anatinus|Rep:
            PREDICTED: similar to zinc finger protein 709 -
            Ornithorhynchus anatinus
          Length = 1701

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 362  LLLGPYNGAPRPCLFHSARPGP-AEGGRPTPPTSSGTG 252
            LL GP +G P P    S RPG     G P P +  GTG
Sbjct: 984  LLPGPLSGVPAPAETESHRPGTLPSAGTPAPDSLGGTG 1021


>UniRef50_A4M099 Cluster: Putative uncharacterized protein
           precursor; n=1; Geobacter bemidjiensis Bem|Rep: Putative
           uncharacterized protein precursor - Geobacter
           bemidjiensis Bem
          Length = 113

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 215 FIQRYSSTRGGRRLYPTK*AVSGDRPPRAPGERCEKGMGAGRRCT 349
           F+QRY+     R LYPT     G    R P +   KG+ AG+RC+
Sbjct: 69  FLQRYNLAFD-RSLYPTLFIKGGGFSRRPPSKALTKGLTAGQRCS 112


>UniRef50_P17437 Cluster: Skin secretory protein xP2 precursor; n=3;
           Tetrapoda|Rep: Skin secretory protein xP2 precursor -
           Xenopus laevis (African clawed frog)
          Length = 439

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 341 GAPRPCLFHSARPGPAEGGRPTPPTSSG 258
           GAP P     A P PA+GG P P  + G
Sbjct: 61  GAPAPAPAEGAEPAPADGGAPAPAPAEG 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,829,291
Number of Sequences: 1657284
Number of extensions: 13840552
Number of successful extensions: 43163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43019
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)