Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H04
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   0.64 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   2.6  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 205 LSLVHSEVQQYTRRATPVPDEVGGVGRPPSAG 300
           L+L+HS   ++ +   PV +E     RPP+AG
Sbjct: 555 LNLIHSSNNEFMKSIFPVAEESNSRRRPPTAG 586


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 283 RPPSAGPGRAL*KRHGRGAPLYGPSNKYTSRT 378
           +PP +GPG     R  RG  ++G S +  SR+
Sbjct: 86  QPPPSGPGSKRGGRRERGGRVHGDSGRLRSRS 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,952
Number of Sequences: 5004
Number of extensions: 52498
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)