Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H04
         (859 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U05040-1|AAA17976.2|  644|Homo sapiens FUSE binding protein prot...    31   5.4  
BC017247-1|AAH17247.1|  653|Homo sapiens FUBP1 protein protein.        31   5.4  
AB209366-1|BAD92603.1|  493|Homo sapiens far upstream element-bi...    31   5.4  
BC127935-1|AAI27936.1|  241|Homo sapiens LOC440836 protein protein.    31   7.1  
AK125740-1|BAC86269.1|  198|Homo sapiens protein ( Homo sapiens ...    31   7.1  

>U05040-1|AAA17976.2|  644|Homo sapiens FUSE binding protein
           protein.
          Length = 644

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 356 LGPYNGAPRPCLFHSARPGPAEGGRPTPPTSSGTGVA 246
           +GPYN AP    ++   PGPA  G P P    G G A
Sbjct: 481 MGPYNPAP----YNPGPPGPAPHGPPAPYAPQGWGNA 513


>BC017247-1|AAH17247.1|  653|Homo sapiens FUBP1 protein protein.
          Length = 653

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 356 LGPYNGAPRPCLFHSARPGPAEGGRPTPPTSSGTGVA 246
           +GPYN AP    ++   PGPA  G P P    G G A
Sbjct: 480 MGPYNPAP----YNPGPPGPAPHGPPAPYAPQGWGNA 512


>AB209366-1|BAD92603.1|  493|Homo sapiens far upstream
           element-binding protein variant protein.
          Length = 493

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 356 LGPYNGAPRPCLFHSARPGPAEGGRPTPPTSSGTGVA 246
           +GPYN AP    ++   PGPA  G P P    G G A
Sbjct: 331 MGPYNPAP----YNPGPPGPAPHGPPAPYAPQGWGNA 363


>BC127935-1|AAI27936.1|  241|Homo sapiens LOC440836 protein protein.
          Length = 241

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 353 GPYNGAPRPCLFHSARPGPAEGGRPTPPTSSGTGVARLV 237
           G + G   P    +  PGP    RPTP T+ G G   LV
Sbjct: 22  GGHTGPAAPSRRTTEAPGPNTSCRPTPQTTCGPGPGHLV 60


>AK125740-1|BAC86269.1|  198|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43752 fis, clone TESTI2037643. ).
          Length = 198

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 250 TPVPDEVGGVGR-PPSAGPGRAL*KRHGRGAPL 345
           +P     G  G+ PP AGPG  L +  G+GAPL
Sbjct: 80  SPTSPSYGARGKVPPGAGPGSPLSRGAGQGAPL 112


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,893,892
Number of Sequences: 237096
Number of extensions: 2291770
Number of successful extensions: 7492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7478
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)